PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.005G257600.1

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

FAR1

Protein Properties

Length: 760aa MW: 86814.7 Da PI: 6.4767

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.005G257600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	101.4	8.9e-32	77	164	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGFs+r+s ++s+r+g+i++r+ vCs+eg+r+e +++ +++r+r++tr+gCka+++vkk+++gkw vtkl+++HnHel+p Potri.005G257600.1 77 FYNSYARRVGFSTRVSVYQRSRRDGSIICRQIVCSREGFRREGNEN--RSKRQRTVTRVGCKAQMTVKKQSSGKWAVTKLVEDHNHELVP 164 9***************************************9988..999***********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.3E-29	77	164	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.2E-28	285	375	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.633	565	601	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.6E-10	575	600	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.4E-9	576	603	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 760 aa Download sequence Send to blast
MDHLNVIPFD NISMGSEDDP NTALHLQHHQ PHNLDFDFDY PNNNNDDDLL EPTSLSDPNL 60 DPYEGMEFDS EQSARIFYNS YARRVGFSTR VSVYQRSRRD GSIICRQIVC SREGFRREGN 120 ENRSKRQRTV TRVGCKAQMT VKKQSSGKWA VTKLVEDHNH ELVPPDKVHS LRSHRHVSGS 180 ARSLIDTLQA AGMGPSGVMS VLIRESGGIN NVGFTKVDCQ NYMSTSRQRT LGPGGQAVFD 240 YLKQMQAEDP GFFYAVQGDF ENSTGNVFWA DANARMNYSF FGDTITFDTT YRTNRYRVPF 300 APFTGWNHHG QPLLFGCALL LNESESSFVW LFETWLAAMS GRCPISITTD QDRIIRAAVS 360 QAFPGTRLRF CKWNVFREAQ EKLSHEYHSH PTFEPEFHRC INMAESIDEF ESCWESLLQR 420 FDLSDNEWLQ SMYNARQQWV PVYLQDTFFG EMSILQGSDS INSYFDGYIN ASTNIHNLIK 480 QYEKAMAIRH EKEVKADYDT LNSPPVLKTP SPMEKQAANL YTRRIFMKFQ EELVETLAYL 540 ATVVDDIGSA ITYQVAKFGE DHKVHHVRFN AFEKRASCSC QMFEFSGIIC RHILAVFRVK 600 NVLTLPSNYI LKRWTRNAKS GVVLDEHTLG LPCNTQESLA ARSENLRQEA IKYVEEGAES 660 EHIYNVAMDA LHEAIRKVAA AKMCGSAPVQ TTVVNGSQQL LSCSLDEDEK IQELTAELEQ 720 ASQRCEAYRT KLLCVMKDME EWKLRISVKV QNVRLKMKD*

Sequence ? help Back to Top

Protein Sequence Length: 760 aa Download sequence Send to blast

MDHLNVIPFD NISMGSEDDP NTALHLQHHQ PHNLDFDFDY PNNNNDDDLL EPTSLSDPNL  60
DPYEGMEFDS EQSARIFYNS YARRVGFSTR VSVYQRSRRD GSIICRQIVC SREGFRREGN  120
ENRSKRQRTV TRVGCKAQMT VKKQSSGKWA VTKLVEDHNH ELVPPDKVHS LRSHRHVSGS  180
ARSLIDTLQA AGMGPSGVMS VLIRESGGIN NVGFTKVDCQ NYMSTSRQRT LGPGGQAVFD  240
YLKQMQAEDP GFFYAVQGDF ENSTGNVFWA DANARMNYSF FGDTITFDTT YRTNRYRVPF  300
APFTGWNHHG QPLLFGCALL LNESESSFVW LFETWLAAMS GRCPISITTD QDRIIRAAVS  360
QAFPGTRLRF CKWNVFREAQ EKLSHEYHSH PTFEPEFHRC INMAESIDEF ESCWESLLQR  420
FDLSDNEWLQ SMYNARQQWV PVYLQDTFFG EMSILQGSDS INSYFDGYIN ASTNIHNLIK  480
QYEKAMAIRH EKEVKADYDT LNSPPVLKTP SPMEKQAANL YTRRIFMKFQ EELVETLAYL  540
ATVVDDIGSA ITYQVAKFGE DHKVHHVRFN AFEKRASCSC QMFEFSGIIC RHILAVFRVK  600
NVLTLPSNYI LKRWTRNAKS GVVLDEHTLG LPCNTQESLA ARSENLRQEA IKYVEEGAES  660
EHIYNVAMDA LHEAIRKVAA AKMCGSAPVQ TTVVNGSQQL LSCSLDEDEK IQELTAELEQ  720
ASQRCEAYRT KLLCVMKDME EWKLRISVKV QNVRLKMKD*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.005G257600.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006383797.2	0.0	protein FAR1-RELATED SEQUENCE 5
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2K2AMR1	0.0	A0A2K2AMR1_POPTR; Uncharacterized protein
STRING	POPTR_0005s27900.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530
Representative plant	OGRP30	12	351

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Potri.005G257600.1

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]