 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Potri.005G234200.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
SRS |
| Protein Properties |
Length: 316aa MW: 34218.6 Da PI: 8.1523 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.005G234200.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 221.1 | 2.3e-68 | 94 | 246 | 4 | 153 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa......aeaaskrkrelkskkqsalss 88
g+++CqdCGnqakkdC h RCRtCCksrgf C+thvkstWv+aakrrerqqqlaa+++++++++ +++kr+re+ + +s+l++
Potri.005G234200.1 94 GGMNCQDCGNQAKKDCPHLRCRTCCKSRGFPCNTHVKSTWVSAAKRRERQQQLAALQQHNQQQEqhqqqfLGENPKRQREN-HGGASSLAC 183
789****************************************************99988777755543333444555543.556666777 PP
DUF702 89 tklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
t+l+ ++ + le + +P+ev+s+a+frcv+vs++dd++++laYqtav+igGhvf+GiLydqG++
Potri.005G234200.1 184 TRLAATT--SGLELTAFPPEVNSDAIFRCVKVSAMDDADDQLAYQTAVNIGGHVFRGILYDQGAD 246
7766665..5689999***********************************************87 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 316 aa
Download sequence Send
to blast |
MAGWFYLGGG EGPSRKQDQE KEDNNSSLFL YRPSNEEIYN NKGFELWPQY YHQQQNMNSF 60
SFGVGPSRRS LSDDHSSRSG FSLTRQGGGG GLRGGMNCQD CGNQAKKDCP HLRCRTCCKS 120
RGFPCNTHVK STWVSAAKRR ERQQQLAALQ QHNQQQEQHQ QQFLGENPKR QRENHGGASS 180
LACTRLAATT SGLELTAFPP EVNSDAIFRC VKVSAMDDAD DQLAYQTAVN IGGHVFRGIL 240
YDQGADGRYA STGGESSSSG AQQLLITAAG TSTTGTTTNT SNPAAGNTLL DPSSLYPAPL 300
NAFIAGTQFF APPRS*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}. |
