PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G232000.1
Common NamePOPTR_0005s25350g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TALE
Protein Properties Length: 463aa    MW: 51915.3 Da    PI: 6.4554
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G232000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.94.7e-103844211954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yp+++e+  LA+++gLt++qV++WF N R +
  Potri.005G232000.1 384 FEHflHPYPNESEKLMLASQTGLTKNQVSNWFINARVR 421
                         554459******************************88 PP
2BELL106.91.3e-34246317172
                BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         e++e+q k+akL+ lleeV+ rY++y++q++ v+ssFe++aglg+ak+Yt+lAl+a+S+hF +L+dai++qi
  Potri.005G232000.1 246 EKHEVQLKIAKLIALLEEVEGRYEKYYHQMEEVVSSFEEMAGLGAAKSYTALALQAMSKHFCNLRDAIVSQI 317
                         689********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.4E-33179315IPR006563POX domain
PfamPF075268.1E-40185314IPR006563POX domain
PROSITE profilePS5007112.147362425IPR001356Homeobox domain
SMARTSM003898.0E-10365429IPR001356Homeobox domain
CDDcd000861.10E-10365426No hitNo description
SuperFamilySSF466895.56E-18370433IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.8E-28370431IPR009057Homeodomain-like
PfamPF059203.0E-17382421IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MVSQDSSSNS ASSMLHQFIF SDSITSQNQF QNQNFDALVG SNTFPQSHGV LPSIQSLEER  60
MSRSIDLVQA PSVAQESEIS HTRHLMSLLG AANETNRQAQ RLSLSLGSHM LVPQVQYRQR  120
SFNSDLMSPS YLIPREEEAR EACNPGGEQA NNDYSLIGSG FPSSPASLSR RSTTAYGTES  180
FAVAIENSRY LKPAQSLLEE TVHVSCKAVE ISNEKYVRRL IRCRGSLGLS SELKAELWGN  240
GLVQAEKHEV QLKIAKLIAL LEEVEGRYEK YYHQMEEVVS SFEEMAGLGA AKSYTALALQ  300
AMSKHFCNLR DAIVSQINET RRKFSQDLPR TSSGLSPLSF FDKETKHNRM SLQQLGMTQS  360
QRQAWRPIRG LPETSVAILR SWLFEHFLHP YPNESEKLML ASQTGLTKNQ VSNWFINARV  420
RLWKPMIEEM YKVEFADSSE DSNPLPGSSF ITREGVTDHS ED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A7e-17371429563Homeobox protein Meis2
3k2a_B7e-17371429563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G232000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024456830.10.0BEL1-like homeodomain protein 11
RefseqXP_024456831.10.0BEL1-like homeodomain protein 11
RefseqXP_024456832.10.0BEL1-like homeodomain protein 11
RefseqXP_024456833.10.0BEL1-like homeodomain protein 11
SwissprotQ1PFD11e-102BLH11_ARATH; BEL1-like homeodomain protein 11
TrEMBLA0A3N7GHG60.0A0A3N7GHG6_POPTR; Uncharacterized protein
STRINGPOPTR_0005s25350.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126452329
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.11e-104BEL1-like homeodomain 11