 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Potri.005G221400.1 |
| Common Name | POPTR_0005s24280g |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
C2H2 |
| Protein Properties |
Length: 197aa MW: 22529.6 Da PI: 8.7487 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.005G221400.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 13.1 | 0.00029 | 38 | 60 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
y+C+ C++ F + L H+++H
Potri.005G221400.1 38 YSCSFCKRQFISAQALGGHMNVH 60
99*******************99 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| GO:0046872 | Molecular Function | metal ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 197 aa
Download sequence Send
to blast |
MVKKFPQGSS TVKDKWEKNN AIFQGEHSSV FSWPQRNYSC SFCKRQFISA QALGGHMNVH 60
RRDRAKLRQL PSWFFKCPKY PTTNPNPDHL LSSSSKFLPY PDDRTHDHSS YLSSFSSPCC 120
REKKSVVECH ESKDLTKKKN NAGAVFGVGE LKKNFAQECD QLEVLRRNEI INLDMEMGCE 180
DPKEVLDLEL RLGLLV*
|
