![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.005G219600.1 | ||||||||
Common Name | POPTR_0005s24110g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 176aa MW: 19301.1 Da PI: 10.0494 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.4 | 2.3e-20 | 29 | 78 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr ++ +gr++AeIrd ++ +kr +lg+f+taeeAa a+++a+++l+g Potri.005G219600.1 29 HFRGVRKRP-WGRFAAEIRDpWK----KKRSWLGTFDTAEEAALAYDEAARSLRG 78 69*******.**********883....5*************************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.5E-30 | 28 | 86 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.72 | 29 | 86 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.86E-30 | 29 | 85 | No hit | No description |
Pfam | PF00847 | 3.0E-13 | 29 | 78 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.3E-33 | 29 | 92 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-22 | 29 | 86 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 7.7E-10 | 30 | 41 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.7E-10 | 52 | 68 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 176 aa Download sequence Send to blast |
MIVTTTLSLA GSSSPSSPAV QAKNEPQRHF RGVRKRPWGR FAAEIRDPWK KKRSWLGTFD 60 TAEEAALAYD EAARSLRGPK ARTNFFHNDH FAPVPFSQTA VVGAGVFEKC CSPVCLAGEV 120 ARMTMPAASP VRSEYTGYNM ETVNENVGLV LNEEKKLRGG KKPFLFDLNL PAPLF* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-20 | 28 | 85 | 4 | 62 | ATERF1 |
3gcc_A | 3e-20 | 28 | 85 | 4 | 62 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 33 | 52 | RKRPWGRFAAEIRDPWKKKR |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.005G219600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002307631.1 | 1e-128 | ethylene-responsive transcription factor 9 | ||||
TrEMBL | B9H8I3 | 1e-127 | B9H8I3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s24110.1 | 1e-128 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF330 | 34 | 189 |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G50640.1 | 1e-21 | ethylene responsive element binding factor 3 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.005G219600.1 |
Entrez Gene | 7476890 |