PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G217500.1
Common NamePOPTR_0005s23900g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bZIP
Protein Properties Length: 446aa    MW: 47878.2 Da    PI: 6.612
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G217500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1408.7e-13221278360
                         XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 
                         + kr rr+q+NRe+ArrsR+RK+a++ e e+ v +L  e+++L ++     +++++  
  Potri.005G217500.1 221 DAKRVRRMQSNRESARRSRRRKQAQLNERETQVGQLRDERSSLLSRFTDVHQKCDAAS 278
                         579*******************************************999999998665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.7E-9218275No hitNo description
SMARTSM003381.3E-13219283IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.45221273IPR004827Basic-leucine zipper domain
PfamPF001702.8E-9222274IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.18E-8223273No hitNo description
PROSITE patternPS000360226241IPR004827Basic-leucine zipper domain
PfamPF124988.3E-32290417IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MNSVFSVDDF SDPFWPSPPP SPPSTAPAMN RSESEWALEK FLQEVSAASV SSDTNIAAPS  60
ALSQSSTSSI PPENGEDEVV EITKHPNPHP QPLGRNLTNP IDSDEYRAFL KSKLDRACTA  120
AAMSRESDVI KPEDFSSLLE DQRLAAGNVS LGTQAFRTGH GISMAQIGAD GGSPGIPALP  180
TAQKKQEVQT RQTTSGSSRE DSDDDDLEGD TGTNENRDPT DAKRVRRMQS NRESARRSRR  240
RKQAQLNERE TQVGQLRDER SSLLSRFTDV HQKCDAASVD NRILKADIET LRAKVKMVEE  300
QVKRVTGLNP MLLPGFNVPS PGMPFVGGQV DASTNVAVPM QPNPHQFFHQ PVHGITSAAP  360
HLQRLNNSFP NNLLPLATNP QTDNGTSNNG GMASMKLTAG GRGLGAMPFT QQVQKQVGST  420
GGPAGAVPMC DSGLPHVFGK DGKKK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1235242RRSRRRKQ
2237242SRRRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.107090.0leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G217500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1470420.0EF147042.1 Populus trichocarpa clone WS01226_K01 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002307622.20.0light-inducible protein CPRF2
TrEMBLB9H8G30.0B9H8G3_POPTR; Uncharacterized protein
STRINGPOPTR_0005s23900.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF136911825
Representative plantOGRP18391639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54620.11e-45basic leucine zipper 25