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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Potri.005G214800.1 |
Common Name | POPTR_0005s23640g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family |
HSF |
Protein Properties |
Length: 360aa MW: 40692.4 Da PI: 5.3735 |
Description |
HSF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.005G214800.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HSF_DNA-bind | 111.4 | 6.4e-35 | 46 | 137 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92
Fl+k++++++d+++++++sw++ g+sfv +d+++f++++Lp+yFkh+nf+SFvRQLn+YgF+k++ ++ weF+++ F g+k+
Potri.005G214800.1 46 FLTKTFDMVDDPTTNHIVSWNRGGSSFVAWDPHSFSTNLLPRYFKHNNFSSFVRQLNTYGFRKIDPDR---------WEFANEGFLSGQKH 127
9****************************************************************999.........************** PP
XXXXXXXXXX CS
HSF_DNA-bind 93 llekikrkks 102
ll++ikr+k
Potri.005G214800.1 128 LLRNIKRRKA 137
*******986 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 360 aa
Download sequence Send
to blast |
MNPFFTVKQE YAGSSSSPPS GGDEPPPVML PPQPREGLHD TGPPPFLTKT FDMVDDPTTN 60 HIVSWNRGGS SFVAWDPHSF STNLLPRYFK HNNFSSFVRQ LNTYGFRKID PDRWEFANEG 120 FLSGQKHLLR NIKRRKAPSQ PLTQQQAPDA CVEVGRFGLD GEIDRLRRDK QVLMMELVKL 180 RQQQQNARSY IQAMDQRLQA IEQKQQQMMQ FLARAMQNPA FLQQLVQQKE KRKELEEAMT 240 KKRRRPIDQG SSRGGGGRRG GESSHIGGSA NPIKAEPLES GDLEFEVSEL EALALEMQGY 300 GRARREQEDG VEELETPESK DRELDEGFWE ELLNESAGGD EDDVNTLAER LGYLGSSPK*
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 230 | 244 | KRKELEEAMTKKRRR |
Functional Description ? help
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Source |
Description |
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KP013987 | 0.0 | KP013987.1 Populus simonii heat shock transcription factor A7a1 (HsfA7a1) mRNA, complete cds. |