PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G208600.3
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 638aa    MW: 71619 Da    PI: 5.5966
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G208600.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.36.4e-14417463455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  Potri.005G208600.3 417 NHVLAERRRREKLNERFIMLRSLVPFV-----TKMDKASILGDTIEYVKQLR 463
                         7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.3E-386135IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.561413462IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-19415482IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-11417462IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-20417480IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.10E-15417467No hitNo description
SMARTSM003534.4E-18419468IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 638 aa     Download sequence    Send to blast
MEVTTEEASL QRSQQLRELY DSLSIGETNQ PARRPCAALS PEDLTETEWF YLMCVSFSFP  60
PGGGLPGKAY ARRRHVWLTG ANEIDSKTFS RAILAKSARV QTVVCIPLLD GVVEFGTTDK  120
VQEDLGLIQH VKTFFSDHHH RHLTPPKPAL SEHSTSSPAT SSHDHPRFHP PPIPPFYVAA  180
EPSANAEQID EDEEEDEEEE EHDSDSEAET SRDDHLEPRQ AQNPHQVVAA EPSELMQLEM  240
SEDIRLGSPD DGSNNLDSDF PLTGPDNSMD HRSRADSYKA ESARRWTMLQ DNPFSGNLQP  300
SASGPPPLED LAQEDTHYSQ TISTILQSQP VWLAAEPSSI AYEARYHQSA FSRWTNRSDH  360
LFHVSVETTS QWLLKYILFS VPHLHSKSRE DNSPKSRDGE AASRFRKGTP QDELSANHVL  420
AERRRREKLN ERFIMLRSLV PFVTKMDKAS ILGDTIEYVK QLRQKIQDLE TRNKQMESEQ  480
RPRSVDRPQR TSTSDSLKKQ KSGVTVVDRA RSLGPLPDKR KMRVVEDSAG GGAKPKTVGA  540
LPQPEPVVHK ELETSVEVSI IESDALLELE CGFREGLLLD IMQMLRELRI ETIAVQSSLN  600
NGIFAGELRA KVKENVNGKK VSIVEVKRAI HKIIPHD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-15417479870Transcription factor MYC2
5gnj_B4e-15417479870Transcription factor MYC2
5gnj_E4e-15417479870Transcription factor MYC2
5gnj_F4e-15417479870Transcription factor MYC2
5gnj_G4e-15417479870Transcription factor MYC2
5gnj_I4e-15417479870Transcription factor MYC2
5gnj_M4e-15417479870Transcription factor MYC2
5gnj_N4e-15417479870Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1421426ERRRRE
2422427RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G208600.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ9097570.0KJ909757.1 Populus tremula x Populus tremuloides clone INRA 353-38 basic helix-loop-helix transcription factor (bHLH131) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006383662.20.0basic helix-loop-helix protein A
RefseqXP_024457395.10.0basic helix-loop-helix protein A
RefseqXP_024457396.10.0basic helix-loop-helix protein A
SwissprotE3SXU40.0BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A2K2AJX60.0A0A2K2AJX6_POPTR; Uncharacterized protein
STRINGPOPTR_0002s05510.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.16e-62bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]