PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G205900.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family G2-like
Protein Properties Length: 150aa    MW: 17464 Da    PI: 10.0281
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G205900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.52e-301871255
             G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                        prlrWtpeLHe+Fveave+LGG+ kAtP++il++m+vk L ++h+kSHLQ+YR+
  Potri.005G205900.1 18 PRLRWTPELHEHFVEAVERLGGKYKATPRRILQMMGVKELKISHIKSHLQMYRS 71
                        9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.2261474IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-281472IPR009057Homeodomain-like
SuperFamilySSF466898.6E-151671IPR009057Homeodomain-like
TIGRFAMsTIGR015573.8E-231872IPR006447Myb domain, plants
PfamPF002498.8E-101970IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MKTSRKNGVR QYNKSEHPRL RWTPELHEHF VEAVERLGGK YKATPRRILQ MMGVKELKIS  60
HIKSHLQMYR SMKGPKNINV LIPMKKHLQA ERTQLDDMGI SSIFSSQRLL QGEYLMQMES  120
EKSDSKHDIF SDESNGLQLT KEDGGDPEQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-171973357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-171973357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-171973357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-171973357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G205900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002306755.21e-108myb family transcription factor PHL12
TrEMBLA0A2K2AJP11e-107A0A2K2AJP1_POPTR; Uncharacterized protein (Fragment)
STRINGPOPTR_0002s05770.12e-76(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91862839
Representative plantOGRP28515123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40260.15e-27G2-like family protein