PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G200100.1
Common NamePOPTR_0005s22180g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 584aa    MW: 65043.2 Da    PI: 4.5857
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G200100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.32.9e-53171432128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                         ppGfrFhPtdeelv +yLkkk+ +k+++l ++i+e+d+yk++P++Lp +  +k+++++w+fFs+rd+ky++g r+nrat++gyWkatgkd+
  Potri.005G200100.1  17 PPGFRFHPTDEELVLYYLKKKICKKRIKL-NIIRELDVYKWDPEELPgQsILKTGDRQWFFFSPRDRKYPNGARSNRATRQGYWKATGKDR 106
                         8****************************.89**************96446788999********************************** PP

                 NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          v++ ++++vg+kktLvfy+grap+g++tdWvmhey+l
  Potri.005G200100.1 107 IVVC-NSRNVGVKKTLVFYRGRAPSGQRTDWVMHEYTL 143
                         ****.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.32E-6110166IPR003441NAC domain
PROSITE profilePS5100555.58816166IPR003441NAC domain
PfamPF023654.8E-2817143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MKVTADSCLG ADETAWPPGF RFHPTDEELV LYYLKKKICK KRIKLNIIRE LDVYKWDPEE  60
LPGQSILKTG DRQWFFFSPR DRKYPNGARS NRATRQGYWK ATGKDRIVVC NSRNVGVKKT  120
LVFYRGRAPS GQRTDWVMHE YTLDEEELNR CPNVQDYYAL YKVFKKSGPG PKNGEQYGAP  180
FKEEDWADDE NPCVNSLVTP EIPVEQHNEV SLVDNVRVSA QLELPLNDFE DIIKQIAEEP  240
ALNHLQNNDF TYPLPQVASE EEAQSTLVDP SFREVVSEPA GELTTSGQHY NKHTSLNFNQ  300
SATSTLQLHE ASEVTSAPQL NEEDFLEIDD LIGPEPSFYN TEQPAENLQF DGLSEFDLYH  360
DAAMFLRDIG PVDQEAVSCS YVSSYGCDMV NQASYRLQPN SITNPVDYQL QPNLVANQVD  420
YELHPQFFDA EQMNNQLWVH DHQNNALATS ESHHGILFQS TGAVCESSDN STGANGNQGS  480
KEGDAANGWL SSALWGFVES IPTTPASASE NPLVNKAFER MSSFSRIRMN VKNINVDAGN  540
GAASARSTGG NKGFVLLSII GVLCAILWVL VGGAKVLGRS ISS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-491314312140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G200100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024457415.10.0NAC domain-containing protein 17 isoform X1
TrEMBLA0A2K2AJE60.0A0A2K2AJE6_POPTR; Uncharacterized protein
STRINGPOPTR_0005s22180.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61313451
Representative plantOGRP9932711
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.11e-153NAC domain containing protein 17