 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Potri.005G192000.1 |
| Common Name | POPTR_0005s21420g |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
Trihelix |
| Protein Properties |
Length: 588aa MW: 65833.6 Da PI: 6.3471 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.005G192000.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 95 | 7.1e-30 | 63 | 147 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
rW++qe+laL+++r+ m+ +r+++lk+plWeevs+k++e g++rs+k+Ckek+enl k++k++keg+ ++++++ t+++fd+lea
Potri.005G192000.1 63 RWPRQETLALLKIRSAMDAVFRDSSLKGPLWEEVSRKLAELGYHRSAKKCKEKFENLYKYHKRTKEGRTGKSEGK--TYKFFDELEA 147
8********************************************************************975544..6******985 PP
|
| 2 | trihelix | 102.1 | 4.2e-32 | 408 | 493 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
rW+k ev+aLi +r +++ ++++ +k+plWe++s+ m++ g++rs+k+Ckekwen+nk++kk+ke+++kr +++s+tcpyfdql+a
Potri.005G192000.1 408 RWPKVEVQALISLRADLDIKYQEHGAKGPLWEDISAGMQKLGYNRSAKRCKEKWENINKYFKKVKESNRKR-PGDSKTCPYFDQLDA 493
8*********************************************************************8.9************85 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 588 aa
Download sequence Send
to blast |
MLGDSSVLAS SSDVATTATR VVPEGGEVCE VGDAGGFGSN STEEDKNMGG DHEGDRMNYG 60
ANRWPRQETL ALLKIRSAMD AVFRDSSLKG PLWEEVSRKL AELGYHRSAK KCKEKFENLY 120
KYHKRTKEGR TGKSEGKTYK FFDELEAFQN HHSHSAQPPT ILAPPLPPPK AQTPTATTAT 180
LPWTNSPAIV SHVTVQSTTN PIDILSQGIA TPTTIHSTIS PMPLSSNSLN PSQDTLPSSL 240
QNLATHLFSS STSSSTASDE KLEGSRKRKR KRNWKDFFLR LTRDVIKKQE DLQKKFLETV 300
EKCEHERMAR EDAWRMKEMA RMNRQHEILI QERSTAAAKD AAVFAFLQKI SGQQNSTETQ 360
AIPQPKLTPP PTQPPQPRPP PTSLEPVTNL VVSKWDNGEN VTVSSSSRWP KVEVQALISL 420
RADLDIKYQE HGAKGPLWED ISAGMQKLGY NRSAKRCKEK WENINKYFKK VKESNRKRPG 480
DSKTCPYFDQ LDALYKEKNK MESRVSTGYA VKPISTMEPL MVSPEQQCPF EQANQPETII 540
EDNERDINID HNIEEDDDDM DDDTEEEDEG VGFEVVANRP ASLTNGE*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 265 | 270 | RKRKRK |
| 2 | 265 | 271 | RKRKRKR |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | JN315782 | 0.0 | JN315782.1 Populus tomentosa SANT DNA-binding domain-containing protein (GT2) gene, complete cds. |
