 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Potri.005G190300.1 |
| Common Name | POPTR_0005s21260g |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
GRAS |
| Protein Properties |
Length: 463aa MW: 52198.1 Da PI: 4.6819 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.005G190300.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 224.4 | 5.3e-69 | 98 | 452 | 3 | 373 |
GRAS 3 elLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91
+ Ll+ A+av+ ++ +la++++a +sel + d + + +++yft++L+ + + ++ l + e + + e+++ ++++ e+sP++
Potri.005G190300.1 98 DFLLTGAQAVEVSNWHLASNIIAGISELllSQTDENLFSDMVFYFTQGLSYKCRD-TPAL----AFHEIV-HAQNETMSHFQMLKELSPYV 182
579999*********************98455555899***************99.2222....222222.23567788899********* PP
GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
+f+++taNqaIlea+ +e++vHi+D+di+ G+QWp+L+ La+R++ slRiT+++ +++++ +++tg+rL +fAe++g +f+f+ ++
Potri.005G190300.1 183 RFAQFTANQAILEATREENEVHILDLDIMDGIQWPPLMADLAQRNNV--SLRITAIVG-DPEKAALVQHTGRRLVEFAESVGQTFKFDQMT 270
********************************************776..9*****998.6779999***********************87 PP
GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe....adhnsesFlerflealeyysalfd 269
++ ed+ e++ + g +l+ n++++ ++ d+++ + + ++L+ v +lsPk+vv+ve+e ++ +s sF+e f ea+++y+al d
Potri.005G190300.1 271 IEKEEDF--EKI--EGGHTLIANCMIHQLHMTDRNLLVVK---NFLSGVSRLSPKLVVLVEEEllnfLKVSSVSFVEFFREAIQHYTALSD 354
7665555..555..779********999999988888888...9*******************8776678999****************** PP
GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerlee.aGFkpvplsekaakqaklllrkvksdgyrveeesgslv 359
sl+ +++r e E +g +i++ v r e++++W+e ++ Fkp+p+s ++++qak l + gy v++e+ l
Potri.005G190300.1 355 SLQYSYGRVGFELFQKET--MGLRIMDSVRSFPIGR----EEKMSWEESFSLlKNFKPIPMSATNVSQAKQLSGLLG-IGYWVQNENSRLS 438
*****9877766655555..59********999994....44667*****98579*********************9.99*********** PP
GRAS 360 lgWkdrpLvsvSaW 373
l+Wk+rpL+++S+W
Potri.005G190300.1 439 LCWKSRPLTTASSW 452
************** PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 463 aa
Download sequence Send
to blast |
MNCEQAPLIY YNTELQCNLE IASAFPTEKD NLDTDQFIES LLQMEADCMD EAGINNRCGS 60
HTSTSPVNQE SGSLVTSIDE TVHFVGFQES NGSNTFTDFL LTGAQAVEVS NWHLASNIIA 120
GISELLLSQT DENLFSDMVF YFTQGLSYKC RDTPALAFHE IVHAQNETMS HFQMLKELSP 180
YVRFAQFTAN QAILEATREE NEVHILDLDI MDGIQWPPLM ADLAQRNNVS LRITAIVGDP 240
EKAALVQHTG RRLVEFAESV GQTFKFDQMT IEKEEDFEKI EGGHTLIANC MIHQLHMTDR 300
NLLVVKNFLS GVSRLSPKLV VLVEEELLNF LKVSSVSFVE FFREAIQHYT ALSDSLQYSY 360
GRVGFELFQK ETMGLRIMDS VRSFPIGREE KMSWEESFSL LKNFKPIPMS ATNVSQAKQL 420
SGLLGIGYWV QNENSRLSLC WKSRPLTTAS SWIPRHALGS RH*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC208481 | 0.0 | AC208481.1 Populus trichocarpa clone JGIACSB1081-L10, complete sequence. |
