PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

ERF

Protein Properties

Length: 218aa MW: 23843.8 Da PI: 5.7934

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.005G176000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	57.1	4.5e-18	31	80	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +ykGVr ++ +g+Wv+eIr p ++++r++lg++ t+e Aa+a++aa +l+g Potri.005G176000.1 31 KYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTPEAAARAYDAALFCLKG 80 8***998.******9...336**********************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	1.4E-29	30	88	IPR001471	AP2/ERF domain
Pfam	PF00847	1.8E-11	31	80	IPR001471	AP2/ERF domain
SMART	SM00380	1.8E-34	31	94	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.5E-19	31	89	IPR016177	DNA-binding domain
PROSITE profile	PS51032	21.812	31	88	IPR001471	AP2/ERF domain
CDD	cd00018	2.29E-20	31	90	No hit	No description
PRINTS	PR00367	1.4E-8	32	43	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.4E-8	54	70	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MVKSEHRIQS EASKPVAISS TPSPSACKKR KYKGVRMRSW GSWVSEIRAP NQKTRIWLGS 60 YSTPEAAARA YDAALFCLKG SAAALNFPIT SSHYIPDTVM SPKSIQRVAA AAANSFVDNP 120 TTPQSSSPPL PCSSSSSSSI SSPPSVVSSP SDIQLDDYIS LMESFETNNE PVSMLDSWYN 180 FDVLQSPKYL DLNWVSFNPP MIDDLYEGDL RLWSFAE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	4e-15	28	89	2	64	ATERF1
3gcc_A	4e-15	28	89	2	64	ATERF1
5wx9_A	6e-15	31	88	14	72	Ethylene-responsive transcription factor ERF096
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed cotyledons, ovules and seeds of immature siliques. {ECO:0000269\|PubMed:21069430}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). Involved in salt and osmotic stress response pathways. May be regulated by the stress-related genes RD29A, RD22, DREB1A or P5CS during stress response (PubMed:27137403). Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269\|PubMed:21069430, ECO:0000269\|PubMed:27137403}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.005G176000.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by jasmonate (JA) and ethylene. Down-regulated by freezing and heat stresses. {ECO:0000269\|PubMed:21069430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF155957	1e-180	EF155957.1 Populus trichocarpa RAP2-like protein (RAP2L16) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002307427.1	1e-157	ethylene-responsive transcription factor ERF014
Swissprot	Q9SFE4	1e-43	ERF12_ARATH; Ethylene-responsive transcription factor ERF012
TrEMBL	B9H7D0	1e-155	B9H7D0_POPTR; Uncharacterized protein
STRING	POPTR_0005s15830.1	1e-156	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4798	31	56
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21910.1	2e-42	ERF family protein

Link Out ? help Back to Top
Phytozome	Potri.005G176000.1
Entrez Gene	7460943

Publications ? help Back to Top
Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology. Plant Signal Behav, 2014. 9(3): p. e28211 [PMID:24614501] Kazama D, et al. Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis. Plants (Basel), 2013. 2(4): p. 769-85 [PMID:27137403]