PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G164100.5
Common NamePOPTR_0005s17160g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 916aa    MW: 100218 Da    PI: 4.5053
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G164100.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.8e-05261284123
                         EEETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                         y+C++C+ +F  +++L +H+ + H
  Potri.005G164100.5 261 YECHKCTLTFDGQDDLLQHLLSsH 284
                         99******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098210.618135208IPR001739Methyl-CpG DNA binding
SuperFamilySSF541711.99E-8142214IPR016177DNA-binding domain
Gene3DG3DSA:3.30.890.101.9E-6144228IPR001739Methyl-CpG DNA binding
PfamPF014291.0E-5144202IPR001739Methyl-CpG DNA binding
PROSITE profilePS501578.974261289IPR007087Zinc finger, C2H2
PROSITE patternPS000280263284IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 916 aa     Download sequence    Send to blast
MPGFSQGGVK SLEVNHLIST RIAESSSKKR KRGRPRKNEN VDFGNNELVE RGKIENKTIV  60
VVCDDVEVQN KKKEEMEMVS KNGVVVDFVA LGNMEDPYGE ELRRRTEGMQ LKAEFLGFLE  120
GFEGEWGSTR KKRRIVDASL FGDALPIGWK LSICVKKQAG RVWLACTRYI SPNGLQFVSC  180
KEVSSYLLSF SGLHDVRRSN FDHMDGRIKL TDKIATSISA DQTCKDGKNE NDFISYKALP  240
VTSTSTETGG CPREVQTGMN YECHKCTLTF DGQDDLLQHL LSSHQRSPKQ LKCGTSTNEE  300
YCTNIIDDLD CSVAGDVRNL ACINLNRVPP RLIEELNQGR GSDSGLLAPN AKENMFNDDI  360
IEDRNCSSTI DNMVIDDWDA DGKGEPITGS CAAIAENVAA NLKEQRSSEG CSVGLLNSIA  420
VEIMQEKSSK GDLTGIENNM NSVCTGMLNE SKFDDVGKPG TNELTSVCRD NNTALVDDNV  480
VINEQGKNHG GCPVIPFLNE QMHLAENNIT GTPKCTIREP CQEEESEGGL LTISGNEQSF  540
DLKGNVIKVS KGTINVVNHN EVLCLKNNEF GSEIDQSVQT LTNIQERSSN IFSFFPSTNG  600
LTFASKDEQS HDDENSMNQL SCTTSAEDKL QEAKTSCNGE LCIAFGDNCT EQDADIVTGT  660
VQEICFLFAG NQHTLTAKDN ATGPFNGTMD ELKQKMDSVE SVLCLSGDAP MRSVEKNLHT  720
AFTGSIQEEP RVKNTENSKK DDLGHDFSGH PGPNESVESE FVWRNEENGG LRCDFADTCQ  780
PVQASGFFPL YDAVSDKGES EHFGEAYGVI SGFEGLKSGG MENMEYNLLT SQVSSHSDES  840
KVVSCDAVIP QGFDSSVCLE KGDLPFLPKN ASRHHVPAVC VWCGREICQE AFESEAQTST  900
MGFMCAECAA RFSGQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G164100.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024456911.10.0uncharacterized protein LOC7486594 isoform X3
TrEMBLA0A3N7F4P10.0A0A3N7F4P1_POPTR; Uncharacterized protein
STRINGPOPTR_0005s17160.10.0(Populus trichocarpa)