 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Potri.005G155700.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 228aa MW: 25573.4 Da PI: 8.1247 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.005G155700.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 88.2 | 4.4e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
k+i+n rqvtfskRr g+lKKAeELSvLCd+evaviifs tgkl+eyss
Potri.005G155700.1 9 KKIDNVAARQVTFSKRRRGLLKKAEELSVLCDVEVAVIIFSATGKLFEYSS 59
689**********************************************96 PP
|
| 2 | K-box | 45.5 | 3.3e-16 | 85 | 170 | 13 | 98 |
K-box 13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98
+ + + ++ +L+ke+++ +++R++ Ge+L+ L+++eLqqLe+ Le +l + ++K e ++++i++l +k +l eenk L++k+
Potri.005G155700.1 85 ELQLENSNHMRLRKEVSEKSHQLRRMRGEELQGLNIEELQQLEKVLEVGLCCVLETKGERIMNEISTLERKGAQLLEENKHLKQKM 170
55666778899*************************************************************************97 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50066 | 29.226 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SMART | SM00432 | 6.8E-37 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 1.60E-37 | 2 | 75 | No hit | No description |
| PRINTS | PR00404 | 3.0E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 1.31E-30 | 3 | 83 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 1.6E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 3.0E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 3.0E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS51297 | 13.18 | 86 | 176 | IPR002487 | Transcription factor, K-box |
| Pfam | PF01486 | 3.1E-14 | 90 | 170 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 228 aa
Download sequence Send
to blast |
MAREKIKIKK IDNVAARQVT FSKRRRGLLK KAEELSVLCD VEVAVIIFSA TGKLFEYSSS 60
SMKDVLARYN LHSNNLDKLN QPSLELQLEN SNHMRLRKEV SEKSHQLRRM RGEELQGLNI 120
EELQQLEKVL EVGLCCVLET KGERIMNEIS TLERKGAQLL EENKHLKQKM TTICKGKRPA 180
LVDLDTAVQE ERMSSESTSN VCCSSSGPPV EDDSSDTSLK LGLAILS*
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Widely expressed with highest levels in shoot tips and axillary buds. Also found in fully developed pedicels and flowers. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AY501392 | 0.0 | AY501392.1 Populus tomentosa MADS box transcription factor (MADS1) mRNA, complete cds. |
