PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

GATA

Protein Properties

Length: 289aa MW: 31463.7 Da PI: 5.9848

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.005G152800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	53.1	4.3e-17	200	236	1	35
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cgt + Tp++Rrgp+g+++LCnaCGl+++ +g+ Potri.005G152800.1 200 CTHCGTNSksTPMMRRGPSGPRSLCNACGLFWANRGT 236 *****99**********************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51320	14.883	68	103	IPR010399	Tify domain
SMART	SM00979	4.1E-11	68	103	IPR010399	Tify domain
Pfam	PF06200	4.3E-12	72	102	IPR010399	Tify domain
Pfam	PF06203	1.1E-15	132	174	IPR010402	CCT domain
PROSITE profile	PS51017	12.451	132	174	IPR010402	CCT domain
SMART	SM00401	2.3E-16	194	247	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	11.319	194	254	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	6.8E-16	194	247	IPR013088	Zinc finger, NHR/GATA-type
SuperFamily	SSF57716	1.33E-12	196	247	No hit	No description
CDD	cd00202	2.29E-16	199	244	No hit	No description
PROSITE pattern	PS00344	0	200	227	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	9.5E-15	200	236	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MYTHSQPMNV HNQIASPGVD DDRAPADSID HHHHIHYEDG TPTVVDDVSP ESVYVNAGVA 60 ASELGIQPSD CSSQLTLTFR GQVYVFDSVT PDKVQAVLLL LGGCELTPGL EMTPQNQRGV 120 VDYPSRCTQP QRAASLSRFR QKRKERCFDK KVRYGVRQEV ALRMQRNKGQ FTSAKKSEGG 180 YGWDGVQDSG LDDSQQETSC THCGTNSKST PMMRRGPSGP RSLCNACGLF WANRGTLRDL 240 TKKTDHSATL IEQGEAEAND SDSGTAIDTD NNLVTYANGG DTALITEH*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.1091	0.0	stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269\|PubMed:10945256, ECO:0000269\|PubMed:14966217}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269\|PubMed:14966217}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.005G152800.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU277145	2e-84	GU277145.1 Populus balsamifera isolate HAY07 haplotype B GATA type zinc finger protein ZIM gene, partial sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006383573.2	0.0	GATA transcription factor 25
Swissprot	Q9LRH6	2e-86	GAT25_ARATH; GATA transcription factor 25
TrEMBL	A0A2K2AH48	0.0	A0A2K2AH48_POPTR; Uncharacterized protein
STRING	POPTR_0002s11150.1	1e-178	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2836	33	68
Representative plant	OGRP831	16	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24470.2	7e-89	GATA-type zinc finger protein with TIFY domain

Link Out ? help Back to Top
Phytozome	Potri.005G152800.1

Publications ? help Back to Top
Brand LH, et al. Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA. PLoS ONE, 2013. 8(10): p. e75177 [PMID:24146751]