PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G152800.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GATA
Protein Properties Length: 289aa    MW: 31463.7 Da    PI: 5.9848
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G152800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.14.3e-17200236135
                GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C++Cgt +  Tp++Rrgp+g+++LCnaCGl+++ +g+
  Potri.005G152800.1 200 CTHCGTNSksTPMMRRGPSGPRSLCNACGLFWANRGT 236
                         *******99************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.88368103IPR010399Tify domain
SMARTSM009794.1E-1168103IPR010399Tify domain
PfamPF062004.3E-1272102IPR010399Tify domain
PfamPF062031.1E-15132174IPR010402CCT domain
PROSITE profilePS5101712.451132174IPR010402CCT domain
SMARTSM004012.3E-16194247IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.319194254IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.106.8E-16194247IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.33E-12196247No hitNo description
CDDcd002022.29E-16199244No hitNo description
PROSITE patternPS003440200227IPR000679Zinc finger, GATA-type
PfamPF003209.5E-15200236IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MYTHSQPMNV HNQIASPGVD DDRAPADSID HHHHIHYEDG TPTVVDDVSP ESVYVNAGVA  60
ASELGIQPSD CSSQLTLTFR GQVYVFDSVT PDKVQAVLLL LGGCELTPGL EMTPQNQRGV  120
VDYPSRCTQP QRAASLSRFR QKRKERCFDK KVRYGVRQEV ALRMQRNKGQ FTSAKKSEGG  180
YGWDGVQDSG LDDSQQETSC THCGTNSKST PMMRRGPSGP RSLCNACGLF WANRGTLRDL  240
TKKTDHSATL IEQGEAEAND SDSGTAIDTD NNLVTYANGG DTALITEH*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.10910.0stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:10945256, ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G152800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2771452e-84GU277145.1 Populus balsamifera isolate HAY07 haplotype B GATA type zinc finger protein ZIM gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006383573.20.0GATA transcription factor 25
SwissprotQ9LRH62e-86GAT25_ARATH; GATA transcription factor 25
TrEMBLA0A2K2AH480.0A0A2K2AH48_POPTR; Uncharacterized protein
STRINGPOPTR_0002s11150.11e-178(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28363368
Representative plantOGRP8311661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.27e-89GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]