PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G152500.4
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GATA
Protein Properties Length: 309aa    MW: 34251.1 Da    PI: 8.9622
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G152500.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.91.8e-15218251132
                GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrk 32 
                         C++Cg+++  Tp +Rrgp g++tLCnaCGl+++ 
  Potri.005G152500.4 218 CQHCGVSEnnTPAMRRGPAGPRTLCNACGLMWAN 251
                         *******99***********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132013.04378113IPR010399Tify domain
SMARTSM009799.9E-878113IPR010399Tify domain
PfamPF062003.2E-1081112IPR010399Tify domain
PROSITE profilePS5101712.65146188IPR010402CCT domain
PfamPF062038.1E-15146187IPR010402CCT domain
SMARTSM004012.6E-4212272IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.107.2E-13216252IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577163.14E-7216255No hitNo description
CDDcd002022.12E-11217252No hitNo description
PfamPF003203.2E-13218252IPR000679Zinc finger, GATA-type
PROSITE patternPS003440218245IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MAAAAATTTN PQSLQARPYE DPRTRASIQI DDDDGEYEDA DGMDGMKEAA TVAQVNSGVS  60
VAEHHRGVRV GVGGGVVTTS RTSELTLSFE GEVYVFPAVT PEKVQAVLLL LGGRDMPTAV  120
PTIEVPYDQN NRGVVDNPKF SNLSRRIASL VRFREKRKER CFDKKIRYTV RKEVAQRMHR  180
KNGQFASLKE SPGSSSWDSS QSCLQDVIPC PETVVRRCQH CGVSENNTPA MRRGPAGPRT  240
LCNACGLMWA NKVFFFCFCF KMHVNCSCWS HRVKQSIINQ MSCICLQVFL NGKNKLVVSD  300
VFKVYSKR*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G152500.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002307331.20.0GATA transcription factor 24 isoform X2
RefseqXP_024458026.10.0GATA transcription factor 24 isoform X1
RefseqXP_024458027.10.0GATA transcription factor 24 isoform X3
RefseqXP_024458031.10.0GATA transcription factor 24 isoform X6
SwissprotQ8GXL77e-61GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A3N7FVZ20.0A0A3N7FVZ2_POPTR; Uncharacterized protein
TrEMBLB9H6T40.0B9H6T4_POPTR; Uncharacterized protein
STRINGPOPTR_0005s19550.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.23e-61ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]