PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G152500.1
Common NamePOPTR_0005s19550g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GATA
Protein Properties Length: 366aa    MW: 39708.2 Da    PI: 4.9001
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G152500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.94.5e-16218254135
                GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C++Cg+++  Tp +Rrgp g++tLCnaCGl+++ kg+
  Potri.005G152500.1 218 CQHCGVSEnnTPAMRRGPAGPRTLCNACGLMWANKGS 254
                         *******99************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132013.04378113IPR010399Tify domain
SMARTSM009799.9E-878113IPR010399Tify domain
PfamPF062004.1E-1081112IPR010399Tify domain
PROSITE profilePS5101712.65146188IPR010402CCT domain
PfamPF062031.0E-14146187IPR010402CCT domain
SMARTSM004011.1E-8212265IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.1E-14216259IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577164.75E-11216262No hitNo description
CDDcd002021.21E-15217261No hitNo description
PfamPF003206.7E-14218254IPR000679Zinc finger, GATA-type
PROSITE patternPS003440218245IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MAAAAATTTN PQSLQARPYE DPRTRASIQI DDDDGEYEDA DGMDGMKEAA TVAQVNSGVS  60
VAEHHRGVRV GVGGGVVTTS RTSELTLSFE GEVYVFPAVT PEKVQAVLLL LGGRDMPTAV  120
PTIEVPYDQN NRGVVDNPKF SNLSRRIASL VRFREKRKER CFDKKIRYTV RKEVAQRMHR  180
KNGQFASLKE SPGSSSWDSS QSCLQDVIPC PETVVRRCQH CGVSENNTPA MRRGPAGPRT  240
LCNACGLMWA NKGSLRDLSK GGRNLPMGQI EPGTPIDVKP SIMEGEFSGN QDEHGTAKNL  300
PKAVNEGFNN RSINPDEVLQ EADQDLTNTL PMGAVHSSGD DDEQEPLVEL ASPSDTELDI  360
PANFE*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G152500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002307331.20.0GATA transcription factor 24 isoform X2
SwissprotQ8H1G08e-66GAT28_ARATH; GATA transcription factor 28
TrEMBLB9H6T40.0B9H6T4_POPTR; Uncharacterized protein
STRINGPOPTR_0005s19550.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33193364
Representative plantOGRP8311661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-66ZIM-like 1