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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Potri.005G148400.1 |
| Common Name | POPTR_0005s19220g |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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| Family |
AP2 |
| Protein Properties |
Length: 668aa MW: 73255.3 Da PI: 7.3708 |
| Description |
AP2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.005G148400.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 47.9 | 3.4e-15 | 326 | 385 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+ ++ a++k++g
Potri.005G148400.1 326 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDMEEKAARSYDLAALKYWG 385
78*******************988886678446*************************98 PP
|
| 2 | AP2 | 46.4 | 9.6e-15 | 428 | 479 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g
Potri.005G148400.1 428 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 479
57****************988532...5************************997 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 668 aa
Download sequence Send
to blast |
MKSMSNNNNG SNNNWLGFSL SPHMKMEAAS DPQHHHQYHH QTQTHAPTAD SVSAAVPTSF 60
YLSTSLFNSS GICYGVGENG GFHSPLSVMP LKSDGSLCIM EALTRSQPEG MVSSPSPKLE 120
DFLGGATMES HQYSSHEREA MALSLDSIYY QQSSEPETNR QHSLNLYEPY RQQDQQFSVQ 180
THPYYSGIAC QGLYQAPLEG ETKGTQLADC NSPIPLMGDD ELPCLKNWAA RHYSSQNVLE 240
QQINSGMVND GGASCSASAV GCGDLQSLSL SMSPGSQSSC ITAPRQISPA GTECVAIETK 300
KRGPVKVGQK QPVHRKSIDT FGQRTSQYRG VTRHRWTGRY EAHLWDNSCK KEGQTRKGRQ 360
VYLGGYDMEE KAARSYDLAA LKYWGPSTHI NFPLENYQEE LEEMKNMGRQ EYVAHLRRKS 420
SGFSRGASIY RGVTRHHQHG RWQARIGRVA GNKDLYLGTF STQEEAAEAY DIAAIKFRGV 480
NAVTNFNITR YDVDRIMASN TLLAGELARR NRDKESSIEA IDYNTSTQNN CVLYQSPQEQ 540
PNASGESLNQ KSMSAGNYRS TSFSVAVQDL MGIDHSVNSS QPVVDESAKL GGTHLSNPSS 600
LVTSLSSSRE ASPDKTGTPV LFAKPPRASK FIGPTTSVTP WIQAAAQLRP AGISMAHLPV 660
FAAWNDT*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Highly expressed at the base of the stem. Expressed in stems. Expressed a low levels in crown roots and seeds (PubMed:21807632). Expressed in the stem region where adventitious (crown) root initiation occurs (PubMed:21481033). {ECO:0000269|PubMed:21481033, ECO:0000269|PubMed:21807632}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Acts as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | HM853670 | 1e-175 | HM853670.1 Populus tremula x Populus alba aintegumenta (ANT) mRNA, partial cds. |
