PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G145500.1
Common NamePOPTR_0005s18900g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family LBD
Protein Properties Length: 243aa    MW: 26199.5 Da    PI: 6.012
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G145500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260100.71.4e-312103197
              DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                         +C++C+vlr++C+++C+l+p++     p++q +++ +v+k+FG++ ++++++++pe++r+ +++sl++eA+ r+ +Pv+Gavg++++++++
  Potri.005G145500.1   2 SCNGCRVLRKGCSENCILRPCLqwiesPEAQGHATVFVAKFFGRAGLMSFISSVPEDQRPSLFQSLLFEACGRTVNPVNGAVGLLWTGNWH 92 
                         6****************************************************************************************** PP

              DUF260  87 leqlkaelall 97 
                         ++q+++e++l+
  Potri.005G145500.1  93 VCQAAVETVLR 103
                         *****998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.9671107IPR004883Lateral organ boundaries, LOB
PfamPF031957.3E-272101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSENCILR PCLQWIESPE AQGHATVFVA KFFGRAGLMS FISSVPEDQR  60
PSLFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGTLRPM PDLLTGGGSP  120
SSSPPSDEAS EFEVACTDIW KLQDPNPNPI HHSRFSNSRS RVSSKRKGTE EPMVVNMRHD  180
DLDLLLTPST SQKGFAEICR PGTPSMNSEE SVTTNATCFD SAGFGDQYGN GGGETKLLNL  240
FL*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G145500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1488300.0EF148830.1 Populus trichocarpa x Populus deltoides clone WS0138_O01 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002306497.11e-180LOB domain-containing protein 37
SwissprotQ9SN232e-89LBD38_ARATH; LOB domain-containing protein 38
TrEMBLB9H6M31e-179B9H6M3_POPTR; Uncharacterized protein
STRINGPOPTR_0005s18900.11e-180(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.12e-82LOB domain-containing protein 37