PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.005G134200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | Dof | ||||||||
Protein Properties | Length: 332aa MW: 35465.7 Da PI: 9.7771 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125.5 | 1.6e-39 | 52 | 111 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++l+cprCds+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknk++s Potri.005G134200.1 52 QEKLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKNTS 111 7899*****************************************************875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 9.0E-26 | 52 | 108 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 8.8E-33 | 53 | 109 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.544 | 55 | 109 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 57 | 93 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MIQELLGGAG LISGERKIPI NATILDQGAP SPSPSSSTTT TTSATNSTPS AQEKLRCPRC 60 DSSNTKFCYY NNYNLTQPRH FCKTCRRYWT KGGALRNVPI GGGCRKNKNT SVSASVGKSG 120 TSKIKTIASE IGRSGFGNGF DYELSSSPIM RASPQNSHIF ALLRATQNPN PSTPCNSISV 180 KQEGFLIGKH MISEPAVETA ALNARILGLD PISQVSSLGL CSPSWKSNQH QQNRYTVGEA 240 QNSGIQELYQ RLRSSTNYYT DNPSAIVLSN VTTSSSTSTS TSSTILESAP VAGGEFSYWN 300 QAFSWSGLPT TNGFNSALPR VLQGSKQLLI L* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.13123 | 0.0 | stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.005G134200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF144749 | 0.0 | EF144749.1 Populus trichocarpa clone WS01117_M16 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024456610.1 | 0.0 | dof zinc finger protein DOF2.4 | ||||
TrEMBL | A0A2K2AG93 | 0.0 | A0A2K2AG93_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s11620.1 | 1e-163 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7219 | 32 | 47 | Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60200.1 | 1e-34 | TARGET OF MONOPTEROS 6 |
Link Out ? help Back to Top | |
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Phytozome | Potri.005G134200.1 |