PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G126400.2
Common NamePOPTR_0005s12790g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family BES1
Protein Properties Length: 320aa    MW: 34843 Da    PI: 8.1554
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G126400.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822215.21.5e-6651481148
              DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspe 91 
                         g+s r ptwkErEnn rRERrRRaiaakiy+GLR qGnyklpk++DnneVlkALc+eAGw+ve+DGttyrkg+kp+  +e+ag  a++s +
  Potri.005G126400.2   5 GSSARLPTWKERENNMRRERRRRAIAAKIYTGLRTQGNYKLPKHCDNNEVLKALCAEAGWIVEEDGTTYRKGCKPP-PSEIAGMPANISAC 94 
                         5899************************************************************************.************** PP

              DUF822  92 sslqsslkssalaspvesysaspksssfpspssldsislasaasllpvlsvlslvss 148
                         ss+q s++ss++aspv+sy+asp+sssfpsp+ +d +s+   + llp+l++ ++++ 
  Potri.005G126400.2  95 SSIQPSPQSSNFASPVPSYHASPSSSSFPSPTCFDGNSS---TYLLPFLRNIASIPT 148
                         ***********************************9966...699999999887655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056879.5E-637130IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009741Biological Processresponse to brassinosteroid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MTAGGSSARL PTWKERENNM RRERRRRAIA AKIYTGLRTQ GNYKLPKHCD NNEVLKALCA  60
EAGWIVEEDG TTYRKGCKPP PSEIAGMPAN ISACSSIQPS PQSSNFASPV PSYHASPSSS  120
SFPSPTCFDG NSSTYLLPFL RNIASIPTNL PPLRISNSAP VTPPRSSPTC RSSKRKVDWE  180
SLSNGSLNSF RHPLFAASAP SSPTRRPHLT PATIPECDES DASTVDSGRW LSFQAVAPQV  240
APPSPTFNLV KPVDQQCAFQ IGVDRHEGAE FEFENCRVKP WEGERIHEIG VDDLELTLGS  300
GKVHGQASID DLAWERSNK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A4e-30986372449Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B4e-30986372449Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C4e-30986372449Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D4e-30986372449Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.3350.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G126400.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1480140.0EF148014.1 Populus trichocarpa clone WS0126_M10 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006383241.10.0BES1/BZR1 homolog protein 2
SwissprotQ94A431e-112BEH2_ARATH; BES1/BZR1 homolog protein 2
TrEMBLA9PI050.0A9PI05_POPTR; BES1 family protein
STRINGPOPTR_0005s12790.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75080.21e-90BES1 family protein