PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G125800.1
Common NamePOPTR_0005s12730g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 549aa    MW: 61628.1 Da    PI: 6.8651
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G125800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS307.92.4e-941785472374
                GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         ++ L+++A++++s++l+ aq +L+rl+++ +sp+g+p+qR+a++f+eAL++ l+    ++  + +p   s++n++++++a+k+f+ +sPi+
  Potri.005G125800.1 178 IQELIKAADCFDSNELQVAQVILERLNHRhQSPNGKPLQRAAFFFKEALQSLLTT--GSTRPQTNPVVPSWSNTVQTIKAYKAFFSISPIP 266
                         689*************************99************************9..33333445555556679***************** PP

                GRAS  92 kfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpeg.....ppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176
                          f+ +t+NqaIl++++g+   +H+iDfdi+ G ++++L+++L +++++     +p lRiT+v+ ++      ++ ++erL++fA+el+++f
  Potri.005G125800.1 267 MFTDFTTNQAILDSLNGNsVFLHVIDFDIGFGCHYASLMRELVDKADScnkitTPLLRITAVVTED--TVIGTKLIKERLSQFAHELKIRF 355
                         ******************5667***********************944445669**********55..99999****************** PP

                GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse...sFlerflealeyy 264
                         + ++++  ++e+l+++++++ +gE++aV l+  ++r l ++   ++  + +++ ++++sP vv++v++e  ++s+   sF +  +++le+y
  Potri.005G125800.1 356 HVEFVLFPTFEMLSFKAIKFFEGEKIAVLLSPTIFRHLGST---NN-VTMFVNDFRRVSPSVVIFVDSEGWTESGarlSFRRNYVNCLEFY 442
                         *****999******************************444...44.556*******************7664444559************ PP

                GRAS 265 salfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee 354
                         s++f+sl+a + ++  ++++k+E  ll+++i  +v   g++       ++ Wre +  aG+++v+ls++a  qa++ll kv+++g+ v ++
  Potri.005G125800.1 443 SMMFESLDAAVITAGgDWARKIEMCLLKPKILAAVEGCGRR------MVSPWREVFAGAGMRAVQLSQFADFQAECLLGKVQVRGFYVAKR 527
                         *******666554445*******************999987......689***************************************** PP

                GRAS 355 sgslvlgWkdrpLvsvSaWr 374
                         +++lvl+W+drpL+++SaW+
  Potri.005G125800.1 528 QAELVLCWHDRPLIATSAWK 547
                         *******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098537.473151527IPR005202Transcription factor GRAS
PfamPF035148.3E-92178547IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MKVPAPSPQN SSSSNNQSQN PKPVSCNNTN NNSRNISFNP SNRNLCYEPT SVLDLRRSPS  60
PARAGKPASA TDPIEWEDHV LQTLDWDSIM RELDFHDDSA PALIKNFPQF GPCSEPQIQS  120
HNLPEFTASQ QIDATQFLNS EFNDMYINSI PTHNLTSLDL SHSFHNNIGN WNAGSDFIQE  180
LIKAADCFDS NELQVAQVIL ERLNHRHQSP NGKPLQRAAF FFKEALQSLL TTGSTRPQTN  240
PVVPSWSNTV QTIKAYKAFF SISPIPMFTD FTTNQAILDS LNGNSVFLHV IDFDIGFGCH  300
YASLMRELVD KADSCNKITT PLLRITAVVT EDTVIGTKLI KERLSQFAHE LKIRFHVEFV  360
LFPTFEMLSF KAIKFFEGEK IAVLLSPTIF RHLGSTNNVT MFVNDFRRVS PSVVIFVDSE  420
GWTESGARLS FRRNYVNCLE FYSMMFESLD AAVITAGGDW ARKIEMCLLK PKILAAVEGC  480
GRRMVSPWRE VFAGAGMRAV QLSQFADFQA ECLLGKVQVR GFYVAKRQAE LVLCWHDRPL  540
IATSAWKC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-2321254737375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and flowers. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G125800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006383233.20.0scarecrow-like protein 15
SwissprotO232101e-159SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A2K2AFW50.0A0A2K2AFW5_POPTR; Uncharacterized protein
STRINGPOPTR_0005s12730.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59593252
Representative plantOGRP10323610
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-161GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]