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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Potri.005G125600.1 |
| Common Name | POPTR_0005s12710g |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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| Family |
C2H2 |
| Protein Properties |
Length: 531aa MW: 55422.2 Da PI: 7.9712 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.005G125600.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 17.1 | 1.5e-05 | 67 | 89 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C++C+k F r nL+ H r H
Potri.005G125600.1 67 FVCEICNKGFQRDQNLQLHRRGH 89
89*******************88 PP
|
| 2 | zf-C2H2 | 11.1 | 0.0012 | 143 | 165 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+kC +C+k + +s+ k H + +
Potri.005G125600.1 143 WKCDKCSKKYAVQSDWKAHSKIC 165
58*****************9876 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009937 | Biological Process | regulation of gibberellic acid mediated signaling pathway |
| GO:0010029 | Biological Process | regulation of seed germination |
| GO:0010431 | Biological Process | seed maturation |
| GO:0005634 | Cellular Component | nucleus |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| GO:0046872 | Molecular Function | metal ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 531 aa
Download sequence Send
to blast |
MPVDLDNSPA ASGEASVSSS GYQPSQQQTP SKTVAIAKKK RNLPGMPDPE AEVIALSPKT 60
LLATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLRQRSS NEVKKRVYVC PETTCVHHDP 120
SRALGDLTGI KKHFCRKHGE KKWKCDKCSK KYAVQSDWKA HSKICGTREY KCDCGTLFSR 180
RDSFITHRAF CDALADESAR AQTQTPNPNP NHNPESDPKV QVDSSPPPAP LPPPVAPDLG 240
PGLSQAPLGL AQSTGMTPSP VLAIQSPELP DNPTQIIEEA PARAPMPATV TAGFNGSCSS 300
STSSSSNGSS TSSVFASLFA SSTASGSLQT PQTPAFTDLI HAMAHPDRPT DLAPSSSAEP 360
ISLCLSTNHG SSIFGTAGQE RRQYAPPPQP AISATALLQK AAQMGAAATN ASLLRGLGIV 420
SSSPSSTQQD NTQWGHRQME PENASLAAGL GLGLPCDGGS GLNELMMGTP SIFGPKHATL 480
DFLELGMAAG GNPSGGLSAL ITSIGGGLDV AAAAASFGGG EFSGKDMGRS *
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Strongly up-regulated during seed development. {ECO:0000269|PubMed:21571950}. |
| Uniprot | TISSUE SPECIFICITY: At 3 days post anthesis (DPA), expressed in the chalazal endosperm region. By 6 DPA, expressed in the endosperm and embryo. In fully germinated seed, strongest expression in the root tip and not detected in the cotyledons. In 4-days old seedlings, restricted to the vasculature of the cotyledons, the shoot apical meristem region, and the root tip. By 8 days, restricted to newly emerged leaves. {ECO:0000269|PubMed:21571950}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}. |
