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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Potri.005G123800.2 |
| Common Name | POPTR_0005s12520g |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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| Family |
GRAS |
| Protein Properties |
Length: 590aa MW: 65076.4 Da PI: 4.9386 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.005G123800.2 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 357 | 2.7e-109 | 224 | 589 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93
++L+ecA+ v+s+ +a + L r +e +s++gdp +R+ +yf+++L +r+a el + + +t+ s+e + +k++++++P+ kf
Potri.005G123800.2 224 KALVECAQLVESKA-DQAVKSLIRFKESVSENGDPGERVGFYFVKGLCRRVAV--GELDDLKNFHQTT---SEEFTLCYKALNDACPYSKF 308
79********9965.566677889****************************8..4444444555554...999***************** PP
GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl 181
+hltaNqaIlea+e+++++Hi+Df+i qG+QW+aLlqaLa+R++g+p ++Ri g+ +p g + +l +tg+rL +fA+ l+++fef++
Potri.005G123800.2 309 AHLTANQAILEATEKASKIHIVDFGIVQGIQWAALLQALATRSAGKPvRIRISGIPAPVLGknPAASLLATGNRLLDFAKLLDLNFEFEP- 398
*******************************************88777*********9988889999***********************. PP
GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
+ + +++l+ + +rv+p+E+laVn++lql++ll e+ + + Lk+ ksl+P++v++ e e+++n+ +l+rf +al+yy+a+f+sl+
Potri.005G123800.2 399 ILTPIQELNESCFRVEPDEVLAVNFMLQLYNLLGETPGAVE---TALKMAKSLNPRIVTLGEYEVSLNRVGYLTRFKNALRYYTAVFESLD 486
799******************************77666666...9********************************************** PP
GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lg 361
+++r+s+er vEr llgr+i+ vv g rrer+e +e+Wr +e++GF++v+ls++a++qak ll +++ s y++++++ ++ l
Potri.005G123800.2 487 PNMSRDSQERLQVERLLLGRRISGVVGPDGI-RRERMEDKEQWRVLMESSGFESVSLSHYAMSQAKILLWNYNsSTMYSLDDSQPGFLtLA 576
*******************************.59***************************************8888****99877777** PP
GRAS 362 WkdrpLvsvSaWr 374
W++ pL++vS+Wr
Potri.005G123800.2 577 WNEVPLLTVSSWR 589
************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 590 aa
Download sequence Send
to blast |
MAYMCADSGN LMAIAQQVIK QKQQQEQQQQ QSHHPQQQFL GLNPFSLNPW PSTTMSANPN 60
LGYGLSGPAA FSDPFQSGPD TGDPPGFSFS NMEHHHSSGF RFPDFTGAGG EFDSDEWMDS 120
LMNGGDSTDS SNLPSGCDAW QNNADFGIYR SDPFNTSPSR LTVGCSPPSD LNRVISNSLW 180
ADPSPPQEIK PKTSPPQQPP PTVKNEVVVG SKEIVELSSS PVLKALVECA QLVESKADQA 240
VKSLIRFKES VSENGDPGER VGFYFVKGLC RRVAVGELDD LKNFHQTTSE EFTLCYKALN 300
DACPYSKFAH LTANQAILEA TEKASKIHIV DFGIVQGIQW AALLQALATR SAGKPVRIRI 360
SGIPAPVLGK NPAASLLATG NRLLDFAKLL DLNFEFEPIL TPIQELNESC FRVEPDEVLA 420
VNFMLQLYNL LGETPGAVET ALKMAKSLNP RIVTLGEYEV SLNRVGYLTR FKNALRYYTA 480
VFESLDPNMS RDSQERLQVE RLLLGRRISG VVGPDGIRRE RMEDKEQWRV LMESSGFESV 540
SLSHYAMSQA KILLWNYNSS TMYSLDDSQP GFLTLAWNEV PLLTVSSWR*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KJ511863 | 0.0 | KJ511863.1 Populus euphratica GRAS/SCL transcription factor (SCL7) mRNA, complete cds. |
