![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.005G122500.1 | ||||||||
Common Name | POPTR_0005s12420g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | ZF-HD | ||||||||
Protein Properties | Length: 340aa MW: 37981.5 Da PI: 9.2955 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 101.6 | 5.5e-32 | 123 | 177 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 ++rY+eClkNhAas+Ggh++DGCgEfmp geegt++++kCaAC+CHR+FHRre + Potri.005G122500.1 123 SIRYRECLKNHAASMGGHVLDGCGEFMPG-GEEGTPETFKCAACECHRSFHRREID 177 689*************************9.999********************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.1E-29 | 124 | 176 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 3.6E-29 | 125 | 176 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 8.0E-20 | 126 | 182 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.067 | 126 | 175 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-29 | 264 | 337 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.98E-19 | 267 | 336 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 8.746 | 273 | 337 | IPR001356 | Homeobox domain |
TIGRFAMs | TIGR01565 | 3.3E-28 | 275 | 332 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 340 aa Download sequence Send to blast |
MELRGQEKET VMPRSFNPPN NRDSSSRIPS APTRRDHRHT DTVLPHTLDL EHQSLYQQQQ 60 QQQKQLNPQH QACKPTRDLD LTPDPTQATT PVATTSATNT APTPSRSISR SPPPPPTSAS 120 SASIRYRECL KNHAASMGGH VLDGCGEFMP GGEEGTPETF KCAACECHRS FHRREIDGAP 180 QCVANSTCYK NSNGKRNILP FPQQLVTSHA PPQSASLHPH QRYHHGTLST YTTPIAPMMM 240 SFGGGGAAAE SSSEDLNMYQ SDLQGQSSAQ PLISKKRFRT RFSEEQKDKM MEFAEKLGWR 300 IQKQDEQEVQ QFCSQVGVKR KVFKVWMHNN KQSMKKKQT* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 3e-23 | 276 | 333 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pth.12066 | 1e-115 | bud| catkin |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, stems, flowers and inflorescence. {ECO:0000269|PubMed:16428600}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription factor. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00268 | DAP | Transfer from AT2G18350 | Download |
![]() |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.005G122500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EF148735 | 0.0 | EF148735.1 Populus trichocarpa x Populus deltoides clone WS0137_D14 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006383190.1 | 0.0 | zinc-finger homeodomain protein 6 | ||||
Refseq | XP_024457240.1 | 0.0 | zinc-finger homeodomain protein 6 | ||||
Refseq | XP_024457241.1 | 0.0 | zinc-finger homeodomain protein 6 | ||||
Refseq | XP_024457242.1 | 0.0 | zinc-finger homeodomain protein 6 | ||||
Refseq | XP_024457243.1 | 0.0 | zinc-finger homeodomain protein 6 | ||||
Refseq | XP_024457244.1 | 0.0 | zinc-finger homeodomain protein 6 | ||||
Swissprot | Q9ZPW7 | 5e-68 | ZHD6_ARATH; Zinc-finger homeodomain protein 6 | ||||
TrEMBL | U5GHR2 | 0.0 | U5GHR2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s12420.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Representative plant | OGRP91 | 16 | 237 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G18350.1 | 6e-56 | homeobox protein 24 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.005G122500.1 |
Entrez Gene | 18099272 |