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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Potri.005G118500.1 |
Common Name | POPTR_0005s12050g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family |
MYB |
Protein Properties |
Length: 428aa MW: 49453.8 Da PI: 6.038 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.005G118500.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 53.9 | 4.1e-17 | 173 | 219 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g WT+eEd ll+++v ++G + W+ Ia+ ++ gR +kqc++rw+++l
Potri.005G118500.1 173 KGQWTAEEDSLLIRLVDEFGIRKWSHIAQIFP-GRIGKQCRERWHNHL 219
799*****************************.*************97 PP
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2 | Myb_DNA-binding | 53.2 | 7.1e-17 | 227 | 267 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
W++eEd l++a+k+ G++ W+ Ia+ ++ gRt++++k++w+
Potri.005G118500.1 227 IWSEEEDRVLIQAHKEIGNK-WAEIAKSLP-GRTENSIKNHWN 267
6*******************.*********.***********8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 428 aa
Download sequence Send
to blast |
MFSPDNYLRK PYMKEYVFPC ETPSAKSFLQ DFNHLDQLHA NRSLFGVLTG SNSDSLDVFP 60 YRLSPATHLY ECDYKPYTNN NNGLYGRDNF QSGGCLNLPQ ENLIDMIGPN QSHMSLDLQE 120 TKPMNVEVLD GTPCATTKYD YYTKGGLYKN DAILPLTRRT GKTPKKEPIN LVKGQWTAEE 180 DSLLIRLVDE FGIRKWSHIA QIFPGRIGKQ CRERWHNHLR PDIKKDIWSE EEDRVLIQAH 240 KEIGNKWAEI AKSLPGRTEN SIKNHWNATK RRQTCTSKRK SRSKYPKGSL LQEYIKSLNL 300 DSIPKVKRRQ RRRRTAKYPD AVLGSSTTMK EPSDEQPQQD LNLCENNDGP VLHYDFDEIP 360 DFDFDETIFQ DVCSIDSLLD EIDCDPVVNE KVLAMEVPRA DEIPFQDFEM MDEVDLWRSD 420 LKTLGMQ*
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 305 | 311 | VKRRQRR |
2 | 306 | 313 | KRRQRRRR |
3 | 307 | 312 | RRQRRR |