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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.005G117100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | DBB | ||||||||
Protein Properties | Length: 194aa MW: 21465.4 Da PI: 7.8811 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 18.9 | 3e-06 | 4 | 33 | 5 | 34 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeH 34 C+ +e+ ++ fC ++ lC C + H Potri.005G117100.1 4 LCDACESAFAIVFCAADEAALCLACDKKVH 33 7*************************9998 PP | |||||||
2 | zf-B_box | 33.5 | 8.7e-11 | 52 | 91 | 2 | 37 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 e ++C+ +e+ ++ ++Ce++++ lC +C ++ H g H Potri.005G117100.1 52 EVPRCDICENAPAFFYCETDGSSLCLQCDMTVHVGgkrtH 91 789******************************6655556 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.755 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.1E-5 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.05E-4 | 3 | 45 | No hit | No description |
SuperFamily | SSF57845 | 1.1E-5 | 48 | 87 | No hit | No description |
SMART | SM00336 | 2.8E-12 | 51 | 96 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.385 | 51 | 96 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.3E-8 | 52 | 91 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 7.01E-8 | 54 | 84 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000989 | Molecular Function | transcription factor activity, transcription factor binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MRTLCDACES AFAIVFCAAD EAALCLACDK KVHMCNKLAS RHVRVGLANP SEVPRCDICE 60 NAPAFFYCET DGSSLCLQCD MTVHVGGKRT HGRYLLLRQK IEFPGNQPQP EDPAPQPMYP 120 GETRRGQNRP QKATSGENRQ NRQASPVLMS VTNSDGHDKV DKNMIDLNMK PHRIHEHASN 180 NQVIVFSSSL RLN* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.15479 | 0.0 | leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.005G117100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF146597 | 0.0 | EF146597.1 Populus trichocarpa clone WS01210_C06 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006383135.1 | 1e-136 | B-box zinc finger protein 18 | ||||
Swissprot | C0SVM5 | 2e-72 | BBX19_ARATH; B-box zinc finger protein 19 | ||||
TrEMBL | U5GHK5 | 1e-135 | U5GHK5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s11900.1 | 1e-135 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2734 | 33 | 70 | Representative plant | OGRP3352 | 16 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38960.1 | 1e-64 | DBB family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.005G117100.1 |