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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Potri.005G114700.1 |
| Common Name | POPTR_0005s11680g |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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| Family |
WOX |
| Protein Properties |
Length: 265aa MW: 30043.6 Da PI: 6.7887 |
| Description |
WOX family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.005G114700.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 60.4 | 2.8e-19 | 33 | 93 | 3 | 57 |
--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
Homeobox 3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
+R+t+t++q+++L+el++ r p+ +e+++++++l +++ ++V++WFqN++a+e++
Potri.005G114700.1 33 TRWTPTTDQIRILKELYYIkgVRSPNGAEIQQISARLrkygKIEGKNVFYWFQNHKARERQ 93
8****************95469*************************************97 PP
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| 2 | Wus_type_Homeobox | 111.3 | 5.4e-36 | 31 | 95 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
++tRWtPt++Qi+iL+ely+ +G+r+Pn +eiq+i+a+L++yGkie+kNVfyWFQN+kaRerqk+
Potri.005G114700.1 31 TSTRWTPTTDQIRILKELYYiKGVRSPNGAEIQQISARLRKYGKIEGKNVFYWFQNHKARERQKK 95
789****************99******************************************96 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 265 aa
Download sequence Send
to blast |
MEPQQQQHQN QQQPNEDNNG GAKGNFICRQ TSTRWTPTTD QIRILKELYY IKGVRSPNGA 60
EIQQISARLR KYGKIEGKNV FYWFQNHKAR ERQKKRFTND VPTQQRTTLK PEDYYSYKYS 120
GSNNNPGFSS ASSSSNTGAV TVGQADNYGY GSVTMQEKKN WDCSVPAGGE SMNNINYGSR 180
GGIYPYSSSY TVFDQDQEAA EKIETLPLFP MHGEDISTSF NINNVNPDFY YSSWYGSDDY 240
GNATTSRTSL ELSLYSYNGQ QQDY*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: In the active shoot meristem, it is specifically expressed in a small cell group underneath the presume position of stem cells. {ECO:0000269|PubMed:12208843}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). Acts in parallel with HAM. {ECO:0000269|PubMed:12208843}. |
