PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G113400.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 319aa    MW: 35288.3 Da    PI: 6.7856
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G113400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.33.7e-1062110254
                         HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         ++ +  rE+ RRd++N+ f eL + l ++     +K++Ka+iL+ +++ +k+L
  Potri.005G113400.1  62 KVQKADREKLRRDNLNEQFLELGTTLDPD----RPKNDKATILTDTIQVLKDL 110
                         677889********************997....79***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.66560110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.55E-1361131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-1161132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.06E-661114No hitNo description
PfamPF000106.2E-862110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.4E-766116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MDQWNTRNDY AQSFVAATTN MVPSNSLHSF PPRSSTRLQN SALEPRQRQE VEVKNPIAVA  60
KKVQKADREK LRRDNLNEQF LELGTTLDPD RPKNDKATIL TDTIQVLKDL TAEVNRLKAE  120
CATLSEETHE LMQEKNELRE EKASLKADTE NLNAQYHQST RAMFPWAAVD PSVVIPPYSY  180
QVPVPVPPGP ISMHPSLQPF VFFGNQNPGA IASPCSTFIP YPTANHPNDQ PPAQYASGSQ  240
FSSKQDSRTK STDHEGGRNK ERCNDSSDVA TDLELKMPGS SAQQDISSGE KKGKQCQRKE  300
RIITNVSSSC SSSSGMLL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.27680.0bud| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G113400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2774129e-65GU277412.1 Populus balsamifera isolate INU03 haplotype A basic helix-loop-helix family protein gene, partial sequence.
GenBankGU2774139e-65GU277413.1 Populus balsamifera isolate INU03 haplotype B basic helix-loop-helix family protein gene, partial sequence.
GenBankGU2774149e-65GU277414.1 Populus balsamifera isolate KUU07 haplotype A basic helix-loop-helix family protein gene, partial sequence.
GenBankGU2774159e-65GU277415.1 Populus balsamifera isolate KUU07 haplotype B basic helix-loop-helix family protein gene, partial sequence.
GenBankGU2774169e-65GU277416.1 Populus balsamifera isolate LOV02 haplotype A basic helix-loop-helix family protein gene, partial sequence.
GenBankGU2774179e-65GU277417.1 Populus balsamifera isolate LOV02 haplotype B basic helix-loop-helix family protein gene, partial sequence.
GenBankGU2774189e-65GU277418.1 Populus balsamifera isolate MGR10 haplotype A basic helix-loop-helix family protein gene, partial sequence.
GenBankGU2774199e-65GU277419.1 Populus balsamifera isolate MGR10 haplotype B basic helix-loop-helix family protein gene, partial sequence.
GenBankGU2774209e-65GU277420.1 Populus balsamifera isolate NWL07 haplotype A basic helix-loop-helix family protein gene, partial sequence.
GenBankGU2774219e-65GU277421.1 Populus balsamifera isolate NWL07 haplotype B basic helix-loop-helix family protein gene, partial sequence.
GenBankGU2774229e-65GU277422.1 Populus balsamifera isolate POR11 haplotype A basic helix-loop-helix family protein gene, partial sequence.
GenBankGU2774239e-65GU277423.1 Populus balsamifera isolate POR11 haplotype B basic helix-loop-helix family protein gene, partial sequence.
GenBankGU2774249e-65GU277424.1 Populus balsamifera isolate RNA13 haplotype A basic helix-loop-helix family protein gene, partial sequence.
GenBankGU2774259e-65GU277425.1 Populus balsamifera isolate RNA13 haplotype B basic helix-loop-helix family protein gene, partial sequence.
GenBankGU2774269e-65GU277426.1 Populus balsamifera isolate STL13 haplotype A basic helix-loop-helix family protein gene, partial sequence.
GenBankGU2774279e-65GU277427.1 Populus balsamifera isolate STL13 haplotype B basic helix-loop-helix family protein gene, partial sequence.
GenBankGU2774289e-65GU277428.1 Populus balsamifera isolate STO11 haplotype A basic helix-loop-helix family protein gene, partial sequence.
GenBankGU2774299e-65GU277429.1 Populus balsamifera isolate STO11 haplotype B basic helix-loop-helix family protein gene, partial sequence.
GenBankGU2774309e-65GU277430.1 Populus balsamifera isolate WHR03 haplotype A basic helix-loop-helix family protein gene, partial sequence.
GenBankGU2774319e-65GU277431.1 Populus balsamifera isolate WHR03 haplotype B basic helix-loop-helix family protein gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024456500.10.0transcription factor bHLH121
RefseqXP_024456502.10.0transcription factor bHLH121
SwissprotQ9LT231e-70BH121_ARATH; Transcription factor bHLH121
TrEMBLA0A2K2AF880.0A0A2K2AF88_POPTR; Uncharacterized protein
STRINGPOPTR_0005s11550.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22823376
Representative plantOGRP34011425
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.11e-64bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]