PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

MYB

Protein Properties

Length: 368aa MW: 41810.6 Da PI: 6.5246

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.005G096600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50	6.9e-16	16	63	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W++ Ed++l+ ++++G ++W++ ++ g+ R++k+c++rw +yl Potri.005G096600.1 16 RGPWSPAEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYL 63 89****************************99**********97 PP
2	Myb_DNA-binding	53.1	7.3e-17	69	114	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++ ++++++ lG++ W++Ia++++ gRt++++k+ w+++l Potri.005G096600.1 69 RGNFSKEEEDTIIKLHQTLGNK-WSKIASHFP-GRTDNEIKNVWNTHL 114 89******************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.069	11	63	IPR017930	Myb domain
SuperFamily	SSF46689	1.54E-29	14	110	IPR009057	Homeodomain-like
SMART	SM00717	1.5E-11	15	65	IPR001005	SANT/Myb domain
Pfam	PF00249	9.0E-15	16	63	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.4E-22	17	70	IPR009057	Homeodomain-like
CDD	cd00167	1.24E-8	18	63	No hit	No description
PROSITE profile	PS51294	24.937	64	118	IPR017930	Myb domain
SMART	SM00717	1.3E-15	68	116	IPR001005	SANT/Myb domain
Pfam	PF00249	7.8E-16	69	114	IPR001005	SANT/Myb domain
CDD	cd00167	6.85E-10	71	114	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.5E-27	71	118	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009751	Biological Process	response to salicylic acid
GO:0009753	Biological Process	response to jasmonic acid
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:2000652	Biological Process	regulation of secondary cell wall biogenesis
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence Send to blast
MGKGRAPCCD KTQVMRGPWS PAEDLRLITF IQKHGHENWR ALPKQAGLLR CGKSCRLRWI 60 NYLRPDVKRG NFSKEEEDTI IKLHQTLGNK WSKIASHFPG RTDNEIKNVW NTHLKKRLTL 120 KDDDERPKGD ELKESSSTSS SSSTSSTIVS SGKRNLEMEL YQQKNQGSST KKPRILEKAK 180 DSSPREVSNQ YRPTKKPKEL SSSSISSNNS NITNSSQVDV SKSEDDQIGS LLNFRGLYDV 240 HSSSEEVNKP EEITAEIPLE SDYDFWNMLD SLSYLQSNEV QLENVEACQI SKFGDAYNIG 300 EVDQNKKWLR YLENELGLDV TKDENQESSL KNAAETLVPE NFQYEMPLKP AEVHPGTIEN 360 FHLWPSL*

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence Send to blast

MGKGRAPCCD KTQVMRGPWS PAEDLRLITF IQKHGHENWR ALPKQAGLLR CGKSCRLRWI  60
NYLRPDVKRG NFSKEEEDTI IKLHQTLGNK WSKIASHFPG RTDNEIKNVW NTHLKKRLTL  120
KDDDERPKGD ELKESSSTSS SSSTSSTIVS SGKRNLEMEL YQQKNQGSST KKPRILEKAK  180
DSSPREVSNQ YRPTKKPKEL SSSSISSNNS NITNSSQVDV SKSEDDQIGS LLNFRGLYDV  240
HSSSEEVNKP EEITAEIPLE SDYDFWNMLD SLSYLQSNEV QLENVEACQI SKFGDAYNIG  300
EVDQNKKWLR YLENELGLDV TKDENQESSL KNAAETLVPE NFQYEMPLKP AEVHPGTIEN  360
FHLWPSL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	1e-25	13	118	1	105	MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00249	DAP	Transfer from AT1G79180	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.005G096600.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002307190.1	0.0	transcription factor MYB10
TrEMBL	B9H624	0.0	B9H624_POPTR; Uncharacterized protein
STRING	POPTR_0005s09930.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10029	30	42
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16490.1	1e-75	myb domain protein 58

Link Out ? help Back to Top
Phytozome	Potri.005G096600.1
Entrez Gene	7492102

Publications ? help Back to Top
Zhao Y,Sun J,Xu P,Zhang R,Li L Intron-mediated alternative splicing of WOOD-ASSOCIATED NAC TRANSCRIPTION FACTOR1B regulates cell wall thickening during fiber development in Populus species. Plant Physiol., 2014. 164(2): p. 765-76 [PMID:24394777]