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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Potri.005G091100.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 263aa MW: 30564.9 Da PI: 8.6623 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.005G091100.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 79.1 | 3e-25 | 16 | 65 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
rien++ rqvtfskRr+ +lKK +ELSvLCda++ +iifsstgkl y+s
Potri.005G091100.1 16 RIENQTTRQVTFSKRRAVLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCS 65
8***********************************************96 PP
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| 2 | K-box | 69.3 | 1.3e-23 | 89 | 176 | 12 | 99 |
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99
e+l+ ela L+ke + L ++ R + Ged++s+ ++eL +eq+Le++++k+R +Knell++q+e+l++ke++l+een ++ + ++
Potri.005G091100.1 89 DRREQLYGELAMLRKESRRLHSNMRCYTGEDMSSIPYEELDAVEQELERAVNKVRHRKNELLHQQLENLRRKERMLEEENSNMYRWIQ 176
55688999************************************************************************99987766 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 263 aa
Download sequence Send
to blast |
MHEVHFGSFA KIAIRRIENQ TTRQVTFSKR RAVLLKKTHE LSVLCDAQIG LIIFSSTGKL 60
CQYCSEGLRM EQIIERYQRM TGTCIPDHDR REQLYGELAM LRKESRRLHS NMRCYTGEDM 120
SSIPYEELDA VEQELERAVN KVRHRKNELL HQQLENLRRK ERMLEEENSN MYRWIQEHRA 180
ALGYQQAAIE ANPVEHQQVL DQFQFCGERP VACFSFQTSL IKLTHTISSL LSPAFKALAS 240
TTEVSKELVR QTKKLQGSSV YN*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed during seed development. |
| Uniprot | TISSUE SPECIFICITY: Expressed in buds, flowers and immature seeds, but not in roots, stems, leaves, seedlings or siliques valves. Expression in seed coat is confined to the endothelium layer. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor involved in the developmental regulation of the endothelium and in the accumulation of proanthocyanidins (PAs) or condensed tannins which give the seed its brown pigmentation after oxidation (PubMed:12368498, PubMed:16080001). Necessary for the normal activation of the BANYULS promoter in the endothelium body (PubMed:12368498). Is required, together with AGL11/STK for the maternal control of endothelium formation, which is essential for female gametophyte development and fertilization, and seed formation (PubMed:22176531). Interacts genetically with AGL1/SHP1 and AGL5/SHP2 in a partially antagonistic manner and represses AGL1/SHP1, AGL5/SHP2, and AGL8/FUL during flower development. Is essential for the coordination of cell divisions in ovule, seed coat development and endosperm formation (PubMed:27776173). Mediates the crosstalk between endothelium and nucellus to ensure proper seed formation. Functions redundantly with AGL63/GOA to repress nucellus growth and promote its degeneration. Represses the negative regulator of autophagy and programmed cell death HVA22D in the proximal nucellus (PubMed:27233529). Binds specifically to the CArG box DNA sequence 5'-CC (A/T)6 GG-3' (PubMed:16080001). {ECO:0000269|PubMed:12368498, ECO:0000269|PubMed:16080001, ECO:0000269|PubMed:22176531, ECO:0000269|PubMed:27233529, ECO:0000269|PubMed:27776173}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC216682 | 3e-67 | AC216682.1 Populus trichocarpa clone POP024-L07, complete sequence. |
| Publications
? help Back to Top |
- Kim K,Jiang K,Teng SL,Feldman LJ,Huang H
Using biologically interrelated experiments to identify pathway genes in Arabidopsis.
Bioinformatics, 2012. 28(6): p. 815-22
[PMID:22271267] - Rhodes DH, et al.
Genome-wide association study of grain polyphenol concentrations in global sorghum [Sorghum bicolor (L.) Moench] germplasm.
J. Agric. Food Chem., 2014. 62(45): p. 10916-27
[PMID:25272193] - Xu W, et al.
Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
Plant Cell, 2016. 28(6): p. 1343-60
[PMID:27233529] - Ehlers K, et al.
The MADS Box Genes ABS, SHP1, and SHP2 Are Essential for the Coordination of Cell Divisions in Ovule and Seed Coat Development and for Endosperm Formation in Arabidopsis thaliana.
PLoS ONE, 2016. 11(10): p. e0165075
[PMID:27776173] - Coen O, et al.
Developmental patterning of the sub-epidermal integument cell layer in Arabidopsis seeds.
Development, 2017. 144(8): p. 1490-1497
[PMID:28348169] - Xu W, et al.
TRANSPARENT TESTA 16 and 15 act through different mechanisms to control proanthocyanidin accumulation in Arabidopsis testa.
J. Exp. Bot., 2017. 68(11): p. 2859-2870
[PMID:28830101] - Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
Developmental patterning of sub-epidermal cells in the outer integument of Arabidopsis seeds.
PLoS ONE, 2017. 12(11): p. e0188148
[PMID:29141031]
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