PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G087700.1
Common NamePOPTR_0005s08990g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 296aa    MW: 31415 Da    PI: 7.467
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G087700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.92.7e-091255445
                        S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                        WT+e d+ + +a + ++ +    W++I + ++ g+t +++k+++ 
  Potri.005G087700.1 12 WTKEQDKAFENALATYPEDtsdWWEKITADVP-GKTVEEIKHHYE 55
                        *******************9999*********.**********96 PP
2Myb_DNA-binding422.2e-13122166347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +WT++E+ l++ +  ++G+g+W++I+r +  +Rt+ q+ s+ qky
  Potri.005G087700.1 122 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 166
                         6*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.829762IPR017884SANT domain
SMARTSM007173.1E-7860IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-41155IPR009057Homeodomain-like
CDDcd001673.11E-81258No hitNo description
PfamPF002494.2E-71255IPR001005SANT/Myb domain
SuperFamilySSF466892.07E-101265IPR009057Homeodomain-like
PROSITE profilePS5129417.581114171IPR017930Myb domain
SuperFamilySSF466891.17E-16117172IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-17119169IPR006447Myb domain, plants
SMARTSM007173.2E-10119169IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-10122165IPR009057Homeodomain-like
CDDcd001678.38E-10122167No hitNo description
PfamPF002492.7E-11122166IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MSVNEGGSGS LWTKEQDKAF ENALATYPED TSDWWEKITA DVPGKTVEEI KHHYELLVED  60
ISQIEAGCVP LPNYSSSSEG STSHAIDEGT GKKGGHLGHH NSDSNNGNKA SRSDQERRKG  120
IAWTEDEHRL FLLGLDKYGK GDWRSISRNF VVTRTPTQVA SHAQKYFIRL NSMNKDRRRS  180
SIHDITSVGN GDVAAPQGPI TGQTNGSAAG SSGKAAKQPP AQPVGPPGVG IYGPPTIGQP  240
IGGPLVSAVG TPVNLPAPAH MAYGVRAPVP GTVVPGAPMN MVPMTYPMPH TTTHR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-20777676RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.122420.0bud| catkin| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269|PubMed:26243618}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G087700.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2175840.0AC217584.1 Populus trichocarpa clone POP021-G16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002306366.20.0transcription factor SRM1
RefseqXP_024457694.10.0transcription factor SRM1
RefseqXP_024457695.10.0transcription factor SRM1
RefseqXP_024457697.10.0transcription factor SRM1
RefseqXP_024457698.10.0transcription factor SRM1
RefseqXP_024457699.10.0transcription factor SRM1
RefseqXP_024457700.10.0transcription factor SRM1
SwissprotQ9FNN61e-130SRM1_ARATH; Transcription factor SRM1
TrEMBLB9H5N10.0B9H5N1_POPTR; Uncharacterized protein
STRINGcassava4.1_012921m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46943358
Representative plantOGRP27517122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-105MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]