PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G087200.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 365aa    MW: 40018.6 Da    PI: 6.7946
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G087200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.3e-20164213255
                 AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+W+AeIrd +     +  r++lg+f+tae Aa+a+++a+++++g
  Potri.005G087200.1 164 KYRGVRQRP-WGKWAAEIRDpF-----KaCRVWLGTFDTAEAAARAYDEAALRFRG 213
                         8********.**********66.....56*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.0E-33163222IPR001471AP2/ERF domain
PfamPF008472.3E-14164213IPR001471AP2/ERF domain
PROSITE profilePS5103225.409164221IPR001471AP2/ERF domain
CDDcd000186.52E-22164223No hitNo description
SMARTSM003808.2E-37164227IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-22164222IPR016177DNA-binding domain
PRINTSPR003671.8E-11165176IPR001471AP2/ERF domain
PRINTSPR003671.8E-11187203IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009749Biological Processresponse to glucose
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MAVWLGSYSF SKSLHVQAKV ANKGDKIVKK EAGSVEEWPL PVMLSGLNRE REMSVMVTAL  60
THVVAGNVPA DDSDCISEAF PNNQDNCAHG DLSAKREREE GGGGSEEYKR HGRAFGDDFL  120
HGGSSSAGRA SGKSIITMTP AATRMAFTPV YEYNETCRDE PRRKYRGVRQ RPWGKWAAEI  180
RDPFKACRVW LGTFDTAEAA ARAYDEAALR FRGNKAKLNF PENVKLRPTP PNPIANQLTV  240
SDSPSSTGLL SVPTSTEAIV HSQALHHTQN REISREQVNQ PQLILGVGGY QRQPMSLYDQ  300
MFLSPPLVSS YPSMSSSTEY SDPMFLPAQQ PGEIMPATSS QSGGEEFQLP AWSDYSHYYT  360
SSSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-22163224163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00584DAPTransfer from AT5G64750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G087200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002307142.20.0ethylene-responsive transcription factor ABR1
TrEMBLA0A3N7EX280.0A0A3N7EX28_POPTR; Uncharacterized protein
STRINGPOPTR_0005s08940.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49333254
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.15e-21ERF family protein