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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.005G075100.3 | ||||||||
Common Name | POPTR_0005s07660g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | CAMTA | ||||||||
Protein Properties | Length: 992aa MW: 111514 Da PI: 6.0993 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 144.3 | 3.4e-45 | 2 | 86 | 34 | 118 |
CG-1 34 pksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118 p+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+he+LK g+v+vl+cyYah+e+n++fqrr+yw+Leeel++ivlvhy+evk Potri.005G075100.3 2 PPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKSGSVDVLHCYYAHGEDNENFQRRSYWMLEEELSHIVLVHYREVK 86 89********************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 65.809 | 1 | 91 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 2.6E-46 | 1 | 86 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 1.9E-38 | 2 | 84 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 8.2E-5 | 409 | 496 | IPR013783 | Immunoglobulin-like fold |
Pfam | PF01833 | 1.2E-5 | 410 | 493 | IPR002909 | IPT domain |
SuperFamily | SSF81296 | 2.18E-15 | 410 | 496 | IPR014756 | Immunoglobulin E-set |
PROSITE profile | PS50297 | 19.041 | 581 | 714 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 1.5E-17 | 590 | 706 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 8.52E-13 | 591 | 702 | No hit | No description |
SuperFamily | SSF48403 | 2.49E-16 | 597 | 704 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 4.1E-7 | 615 | 705 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 9.778 | 643 | 675 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 0.011 | 643 | 672 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 930 | 682 | 711 | IPR002110 | Ankyrin repeat |
SuperFamily | SSF52540 | 9.82E-8 | 813 | 867 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 2 | 816 | 838 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.206 | 819 | 846 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.0041 | 819 | 837 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.0039 | 839 | 861 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.597 | 840 | 864 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 2.0E-4 | 842 | 861 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001077 | Molecular Function | transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 992 aa Download sequence Send to blast |
MPPSGSLFLF DRKVLRYFRK DGHNWRKKKD GKTVKEAHER LKSGSVDVLH CYYAHGEDNE 60 NFQRRSYWML EEELSHIVLV HYREVKGTRT NFNRIKEYEE PIPYSQETKD MMPNSEMDTS 120 VSSSFRSNGY QVPTGTTDST SMNSALASEY EDAESGPFFF HFLCITSSRF NSFLEVQRPA 180 MEKMDTGTSI PYDHMLFSSI LVIHKNLHNN TCILIGGYQG KMPAVPVMEF ISPAQVDTAK 240 DTIGTEPASE PQKVFDLPSW EDVLENCSRG IESVPFQTTL LSQVDTVGVI PKQEDILEKF 300 LANSFDKRQG MPANSDHGMT LDEKSIYSTS MKQHILDDSR TEGLKKLDSF TRWMSKELED 360 VDQPHLQSSS GTYWISAESE NVVDADNPSH GHLDTYTLGP SLSQDQLFSI IDFSPNWAYA 420 GTEIKILVMG RFLKSREEAE NFKWSIMFGE VEVPAETIAD GILRCTTPSH KAGRVPFYVT 480 CSNRVACSEV REFEYRLSHV QDITYNYINI ATEDLHMRLA KLLSLSSAFP SKYDSSDVDE 540 ISQLSNKISS LLKEGNETWD QMLKLTSLEG FSSEKLKDQL LQKALKEQLH EWLLQKVAEG 600 GKGPSVLDEG GQGVLHFAAA LGYEWALEPT IVAGVSVNFR DVNGWTALHW AASYGRERTV 660 ASLIHLGAAP GALTDPTPKY PTGRTPADLA SANGHKGISG FLAESALSAH LSSLNLEKQD 720 GDAAESSGIP ASLTVSDCNE TPVKDADIPI GLSLKDSLAA VCNATQAAAR IHQVFRVQSF 780 QKKQLKEYGD DKFGMSHERA LSLIAVKSQK AGQYDEPVHA AIRIQNKFRG WKGRKEFLII 840 RQRIVKIQAH VRGHQVRKNY RKIIWSVGIL DKIILRWRRK GSGLRGFKSE ALTEGSSMQV 900 VSTKDDDDDF LKEGRKQTEE RSQIALARVK SMHQHPEARE QYHRLRNVVA EIQETKAMYE 960 WANNSEAMVE FDDLINLETL WDGDTFLPTD S* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, carpels, and siliques, but not in stigmas or other parts of the flower. {ECO:0000269|PubMed:11162426, ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:18298954, ECO:0000269|PubMed:19122675, ECO:0000269|PubMed:19270186, ECO:0000269|PubMed:21900483, ECO:0000269|PubMed:22345509, ECO:0000269|PubMed:22371088, ECO:0000269|PubMed:23072934, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25157030, ECO:0000269|PubMed:28351986, ECO:0000269|PubMed:28407487, ECO:0000305|PubMed:11925432}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.005G075100.3 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269|PubMed:11162426, ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:22345509}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011022800.1 | 0.0 | PREDICTED: calmodulin-binding transcription activator 3-like isoform X2 | ||||
Swissprot | Q8GSA7 | 0.0 | CMTA3_ARATH; Calmodulin-binding transcription activator 3 | ||||
TrEMBL | A0A2K1ZRQ8 | 0.0 | A0A2K1ZRQ8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s07660.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22300.2 | 0.0 | signal responsive 1 |
Link Out ? help Back to Top | |
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Phytozome | Potri.005G075100.3 |
Entrez Gene | 7455204 |