![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.005G075000.1 | ||||||||
Common Name | POPTR_0005s07650g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | GeBP | ||||||||
Protein Properties | Length: 504aa MW: 55292.9 Da PI: 4.6443 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 114.8 | 5.2e-36 | 148 | 242 | 3 | 97 |
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 +qr+ws+eDeiv+L G+i+f++++gk++s+d+ +fy fvk+s+ f++s++q+ +Kir LKkK+ ++v+k +sgk +fsk+hd ++ el+k Potri.005G075000.1 148 SQRIWSDEDEIVILNGMIEFQNEKGKNSSADTGDFYGFVKESLCFNASNNQFANKIRMLKKKYFTDVEKNESGKYETFSKPHDLECVELAK 238 79***************************************************************************************** PP DUF573 94 kiWg 97 kiWg Potri.005G075000.1 239 KIWG 242 ***8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 5.2E-30 | 149 | 242 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 504 aa Download sequence Send to blast |
MARKRLIEEP PPAVSSSEEE EETDDKEEEP QNGTVKTQQN AAGEKSNDDD DGTEDDDDDD 60 EEDDDEEVEK KKPELPSKPS NPNSESDSDA DSEDTESTHP ASPSLSGFTI KPISPKRKPD 120 PKPEQPKKEK DVDDKKAKKG AGPGTGGSQR IWSDEDEIVI LNGMIEFQNE KGKNSSADTG 180 DFYGFVKESL CFNASNNQFA NKIRMLKKKY FTDVEKNESG KYETFSKPHD LECVELAKKI 240 WGAGGIVVGN ESNASKNSGK NVSGGGRGII LALAKLGSGE VNGKGKEASV KRGKRGSSEE 300 VSGEGKQGNL KKQKRVLSEE GDGGEEGNVK KGKRGLSEEA DGEGKGNDGK KERGKRVLSE 360 EVNGERKGKG GKKEKQAANN ELSGGEDANV KKQKRVVNGE WKESSMKKQK AVENEEVEGG 420 EGSEDLWDKY PYLRSSLLSE DLPEDVKERA MMMLGKVPEE KLVELEREWR SLMNAKLEFF 480 MMENDLIAKQ MKLALEALKS QDY* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.005G075000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CU233370 | 1e-155 | CU233370.1 Populus EST from severe drought-stressed opposite wood. | |||
GenBank | CU233985 | 1e-155 | CU233985.1 Populus EST from severe drought-stressed opposite wood. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002306307.3 | 0.0 | probable transcription factor At1g11510 | ||||
TrEMBL | A0A2K2AD05 | 0.0 | A0A2K2AD05_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s07650.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF23171 | 3 | 4 | Representative plant | OGRP4222 | 5 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G61730.1 | 2e-25 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.005G075000.1 |
Entrez Gene | 7455203 |