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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Potri.005G074500.1 |
Common Name | POPTR_0005s07590g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family |
MYB |
Protein Properties |
Length: 342aa MW: 37933.8 Da PI: 6.8397 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.005G074500.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 62.1 | 1.2e-19 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd++lv++++++G g+W++ ++ g++R++k+c++rw +yl
Potri.005G074500.1 14 KGPWTPEEDQKLVKYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61
79********************************************97 PP
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2 | Myb_DNA-binding | 54.8 | 2.1e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg++++eE++ +++++ lG++ W++Ia +++ gRt++++k++w+++l
Potri.005G074500.1 67 RGKFSQEEEQTILNLHSILGNK-WSAIAGHLP-GRTDNEIKNFWNTHL 112
89********************.*********.************996 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 342 aa
Download sequence Send
to blast |
MGRSPCCDES GLKKGPWTPE EDQKLVKYIQ KHGHGSWRAL PKLAGLNRCG KSCRLRWTNY 60 LRPDIKRGKF SQEEEQTILN LHSILGNKWS AIAGHLPGRT DNEIKNFWNT HLKKKLIQMG 120 FDPMTHRPRT DIFSSLPHLI ALANLKELID HHSLEEHALR LQTEAAQMAK LQYLQYLLQP 180 QPPAASNNAT SSNNLNNISA IGEMEAFNLL NSLASFKDSP VSSLSQFDLS ASSLQGINDL 240 MPFSHLPDLQ IPCNYQTPPN KDVFDQAPEL TVFSQGENSP NSPWQLPSSS TPSPPSVFPL 300 VPQNSGMVNN LGDASSTSSY VGEAPSVWHD ILENPLFHDI A*
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Specifically and transiently expressed in root endodermal cells overlying the early stages of lateral root primordia formation. {ECO:0000269|PubMed:24902892, ECO:0000269|PubMed:25482809}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. |