 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Potri.005G071100.1 |
Common Name | POPTR_0005s07210g |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
Family |
bHLH |
Protein Properties |
Length: 315aa MW: 34776 Da PI: 7.6444 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.005G071100.1 | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 39.7 | 9.1e-13 | 101 | 152 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+r++h ++Er+RR+++N+ + +r+++P++ + ++++ a+i A++++k+L+
Potri.005G071100.1 101 QRMTHIKVERNRRKQMNDYLTVIRSMMPPS---YVQRPDQASIIGGAINFVKELE 152
79****************************...9******************995 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 315 aa
Download sequence Send
to blast |
MALETVVFQQ DPSSTLGLGA TWIHGFGLEG EKANYHETLN TTISNIGSDF HPNNNWDTNN 60 SSSQEISCAC KGGFFTGGNA AGRRKRQRRI SIKDEAEVAH QRMTHIKVER NRRKQMNDYL 120 TVIRSMMPPS YVQRPDQASI IGGAINFVKE LEKLTQSLEA HKQVNKVQSG TNSNCSSLFS 180 DFFSFSQYST ASSTNKQSNS NNSSPSTDSM LAEKQPIAIA DVEVTMTERH ANLKILSRRH 240 PKQLLKMVTG LHSLGLYTLH LNVTTVGQMV LYSFSVKVED ECRLTSVDEI AAAVHEIAGR 300 IQEDAISNCM PSSE*
|
Nucleic Localization
Signal ? help
Back to Top |
 |
No. |
Start |
End |
Sequence |
1 | 101 | 112 | RMTHIKVERNRR |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AC216447 | 0.0 | AC216447.1 Populus trichocarpa clone ACSB1045-A16, complete sequence. |