PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G053500.1
Common NamePOPTR_0005s05500g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 332aa    MW: 35169.8 Da    PI: 6.5183
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G053500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH277.9e-09180224554
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         h+++Er RR ri ++   L+el+P++      K + a++L + v+Y+k L
  Potri.005G053500.1 180 HSIAERLRRVRITERVKALQELVPTC-----NKTDRAAMLDEIVDYVKFL 224
                         99***********************8.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.59E-10173229No hitNo description
SuperFamilySSF474591.44E-14173235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.783175224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-15177237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-6180224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-10181230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MAGNPPPEGL GDDFFEQILA GQPPGYGGEA VGSTSLPMMG LQLGSSAANV GLTRSSANNN  60
MGMMPLGLNL EHHGFLRQQQ DDGSSSLDTN NSNNINNASP FSITSAGFLG RDSVHMTSLF  120
PTFGQLQIHS SIRSAPPPLG PPQIHQFNSQ PTSGAVSAVP QPPGIRPRVR ARRGQATDPH  180
SIAERLRRVR ITERVKALQE LVPTCNKTDR AAMLDEIVDY VKFLRLQVKV LSMSRLGAAG  240
AVAQLVADVP LSSVQGEGIE GGANQQAWEN WSNDGTEQEV AKLMEEDVGA AMQLLQSKAL  300
CIMPVSLASA IFRARPPNAP TLVKPESNPP S*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G053500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2375879e-96AC237587.1 Populus trichocarpa clone POP036-C05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002306441.30.0transcription factor UNE12 isoform X2
SwissprotO227681e-83UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A2K2AC170.0A0A2K2AC17_POPTR; Uncharacterized protein
STRINGPOPTR_0005s05500.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112053239
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.35e-75bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]