PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.005G020500.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | GATA | ||||||||
Protein Properties | Length: 128aa MW: 14353.8 Da PI: 10.6435 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 24 | 5.5e-08 | 12 | 26 | 21 | 35 |
GATA 21 tLCnaCGlyyrkkgl 35 +LCnaCG++yrkk++ Potri.005G020500.2 12 SLCNACGIRYRKKRS 26 5************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.50.10 | 2.9E-4 | 12 | 25 | IPR013088 | Zinc finger, NHR/GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 128 aa Download sequence Send to blast |
MVFDLWVFFF QSLCNACGIR YRKKRSVMRL EKGPEKKREK TTTSNTTTAT DISTITTATT 60 TNTAQVVSGN GLISESLRMS LMVLGEEMML QRPSVVKKQR CQRKRKLREE EQAAFSLMAL 120 SCGSVFA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.005G020500.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006382425.1 | 5e-78 | GATA transcription factor 16 | ||||
TrEMBL | B9N4N6 | 1e-76 | B9N4N6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s02040.1 | 2e-77 | (Populus trichocarpa) |
Link Out ? help Back to Top | |
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Phytozome | Potri.005G020500.2 |