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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Potri.005G020500.1 |
Common Name | POPTR_0005s02040g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family |
GATA |
Protein Properties |
Length: 162aa MW: 17587.2 Da PI: 10.4527 |
Description |
GATA family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.005G020500.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GATA | 63.1 | 3.3e-20 | 26 | 60 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
C+ C+ttkTplWR gp g+k+LCnaCG++yrkk++
Potri.005G020500.1 26 CTDCKTTKTPLWRGGPAGPKSLCNACGIRYRKKRS 60
*********************************96 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0030154 | Biological Process | cell differentiation |
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter |
GO:0005634 | Cellular Component | nucleus |
GO:0005667 | Cellular Component | transcription factor complex |
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding |
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding |
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding |
GO:0003682 | Molecular Function | chromatin binding |
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
Protein Sequence Length: 162 aa
Download sequence Send
to blast |
MDLKGTKSSR EDESSGSGDI EGKKACTDCK TTKTPLWRGG PAGPKSLCNA CGIRYRKKRS 60 VMRLEKGPEK KREKTTTSNT TTATDISTIT TATTTNTAQV VSGNGLISES LRMSLMVLGE 120 EMMLQRPSVV KKQRCQRKRK LREEEQAAFS LMALSCGSVF A*
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