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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Potri.005G002400.1 |
Common Name | POPTR_0005s00420g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family |
M-type_MADS |
Protein Properties |
Length: 260aa MW: 28967.3 Da PI: 10.3422 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.005G002400.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 55.1 | 9.8e-18 | 10 | 50 | 2 | 42 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
+i n+s r+ tf kRr+g++KK +ELS+LC+++++ ii+s+
Potri.005G002400.1 10 FIVNDSARKATFKKRRKGLMKKVSELSTLCGIDACAIIYSP 50
799*************************************8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 260 aa
Download sequence Send
to blast |
MTRKKVKLAF IVNDSARKAT FKKRRKGLMK KVSELSTLCG IDACAIIYSP YDSQPEVWPS 60 PLGVQRVLSK FKTMPEMEQS KKMVNQESFL RQRITKASEQ LRKQRKENRE KEVTQAMFQC 120 LTGKINLANL NMIDLNDLGW MIDRNLKDVE KRVETLNKRS RSSTGGTSHT SQLAAVAATG 180 AGPSNGGQQA PESSQKADVL ATTNLGVNVD SMLRQQWFMD MVTPQETAIL GFGGDDNMML 240 PFGDTNHNAL FSNPFFPLN*
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 2 | 24 | RKKVKLAFIVNDSARKATFKKRR |
2 | 21 | 25 | KKRRK |
Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in the central cell of the female gametophyte and in early endosperm. Also detected in ovaries, young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:16798889}. |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC214596 | 1e-130 | AC214596.1 Populus trichocarpa clone POP018-C13, complete sequence. |