PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G001800.2
Common NamePOPTR_0005s00360g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 740aa    MW: 79338.9 Da    PI: 6.0748
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G001800.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.63.4e-16469515455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn  ErrRRdriN+++  L+el+P++      K++Ka++L +A+eY+k Lq
  Potri.005G001800.2 469 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 515
                         6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.99E-17461519No hitNo description
SuperFamilySSF474591.57E-20462526IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-20462523IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.349465514IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-13469515IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-17471520IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 740 aa     Download sequence    Send to blast
MPLSELLYRM AKGKIDFSQE KDPSCSTDLS FVPENDFGEL IWENGQIQSS RARKIQPCST  60
LPCQNPKIRY KDIGNGTDIR TGKFGMMEST LNELPMSVPA VEMGVNQDDD MVPWLNYPLD  120
ESPQHDYCSE FLPELSGVTV NGHSSQSNFP SFGKKSFSQS VRDSRTVSVH NGLSLEQGDV  180
AKNSSAGDTE ANRPRTSASQ LYLSSSEHCQ TSFPYFRSRV SAKNGDSTSN AAHHVVSVDS  240
IRAPTSGGGF PSIKMQKQVP AQSTTNSSLM NFSHFARPAA LAKANLQNIG MRAGTGISNM  300
ERTQNKDKGS IASSSNPAEC TPINSCSGLL KETSSHCLPV LMPPKVDAKP SEAKPAEGFV  360
PAELPEATIP EGDSKSDRNC RQNFCESAIK GVADVEKTKE PVVASSSVGS DNSVERASDD  420
PTENLKRKHR DTEESEGPSE DVEEESVGAK KQAPARAGNG SKRNRAAEVH NLSERRRRDR  480
INEKMRALQE LIPNCNKVDK ASMLDEAIEY LKTLQLQVQI MSMGAGLYMP SMMLPPGMPH  540
MHAAHMGQFL PMGVGMGMRM GMGMGFGMSM PDVNGGSSGC PMYQVPPMHG PHFSGQPMSG  600
LSALHRMGGS NLQMFGLSGQ GFPMSFPCAP LVPMSGGPPL KTNMEPNACG VVGATDNLDS  660
ATACSSHEAI QKINSQVMQN NVVNSSMNQT SSQCQATNEC FEQPALVQNN AQDSGVADNR  720
ALKSVGGNDN VPSSEAGCD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1473478ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G001800.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024457375.10.0transcription factor PIF3 isoform X2
TrEMBLA0A2K2A9N80.0A0A2K2A9N8_POPTR; Uncharacterized protein
STRINGPOPTR_0005s00360.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.22e-74phytochrome interacting factor 3