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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Potri.004G230100.3 |
Common Name | POPTR_0004s23920g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family |
B3 |
Protein Properties |
Length: 508aa MW: 57769.4 Da PI: 9.9675 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.004G230100.3 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 41.3 | 2.8e-13 | 1 | 76 | 17 | 99 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
+lp kf++++g++ + + g+ We++l ++++g+++l+kGWkeF++ + g f+vF+++++ +f +v +f++
Potri.004G230100.3 1 MLPQKFVTRYGMD--LTNLAR-LKVLGEAWEIEL--KRCDGKVWLQKGWKEFAEYYSVACGHFLVFEYERNCDF--HVLIFDN 76
69********988..433444.44579*******..*********************************99***..****997 PP
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2 | B3 | 71.2 | 1.3e-22 | 241 | 335 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91
f+ +++ps+v++ l++p +fa+++ k++++ +tl ++gr+W vk++ +++++++++ GWk F+k+n+L +gDf+vF+l++ +e +
Potri.004G230100.3 241 FKVAMSPSYVHTGYKLSVPSSFARKYFTKNKGN--VTLCVTDGRTWPVKYC-NRTKSGVIFCHGWKAFAKDNKLAVGDFCVFELINVTEMS 328
667899********************6555554..7777777********5.55556688999*********************9988888 PP
.EEEEE- CS
B3 92 lvvkvfr 98
l+v +fr
Potri.004G230100.3 329 LKVVFFR 335
8888887 PP
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3 | B3 | 62.1 | 9.2e-20 | 412 | 504 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91
ffkv ++s++l+++ +++p +f+e++ + k ++++ + rsW vkli+r ++++ +l++GW +F+++n L++g ++ F+ ++ ++
Potri.004G230100.3 412 FFKVVLRSYYLNRCFVSVPMSFVERYFKHKS---QIVMLQVADRSWPVKLIIRWSQRQAILSAGWARFARENSLQVGHVCAFEIVK--NGM 497
99************************75543...5999999*********9999999999***********************765..666 PP
.EEEEE- CS
B3 92 lvvkvfr 98
l+v++ r
Potri.004G230100.3 498 LKVSISR 504
7888877 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 508 aa
Download sequence Send
to blast |
MLPQKFVTRY GMDLTNLARL KVLGEAWEIE LKRCDGKVWL QKGWKEFAEY YSVACGHFLV 60 FEYERNCDFH VLIFDNSATE IDYPLKNNRS EVPGRGLLKE CTKDRGKENN SVEILDHFSP 120 SRRTRKKSPL PCPRPHKMVR TYSTYETGTC SKLSTSVEVP PTGTWSRGMK LESSKTKAKL 180 RCSVRGLDEE DSIRGGRGML MARGQRLSYA GALANMRSLT CYEKAKALCR TSAFKSENPF 240 FKVAMSPSYV HTGYKLSVPS SFARKYFTKN KGNVTLCVTD GRTWPVKYCN RTKSGVIFCH 300 GWKAFAKDNK LAVGDFCVFE LINVTEMSLK VVFFRLKDVE SLLSSDMGGA NQVEPNKSLV 360 AKPQSDWNSR DGAGISNPDD EHKPGEFEHS ESRFEVEPGS KTESKFISTH PFFKVVLRSY 420 YLNRCFVSVP MSFVERYFKH KSQIVMLQVA DRSWPVKLII RWSQRQAILS AGWARFAREN 480 SLQVGHVCAF EIVKNGMLKV SISRSDR*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
4i1k_A | 6e-20 | 209 | 506 | 17 | 144 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 6e-20 | 209 | 506 | 17 | 144 | B3 domain-containing transcription factor VRN1 |
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