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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Potri.004G230100.1 |
Common Name | POPTR_0004s23920g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family |
B3 |
Protein Properties |
Length: 559aa MW: 63455.1 Da PI: 9.9716 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.004G230100.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 50.6 | 3.4e-16 | 19 | 108 | 2 | 99 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92
fkv +d+l++g l+lp kf++++g++ + + g+ We++l ++++g+++l+kGWkeF++ + g f+vF+++++ +f
Potri.004G230100.1 19 FKVI-LEDSLREGKLMLPQKFVTRYGMD--LTNLAR-LKVLGEAWEIEL--KRCDGKVWLQKGWKEFAEYYSVACGHFLVFEYERNCDF-- 101
5544.589999999***********988..433444.44579*******..*********************************99***.. PP
EEEEE-S CS
B3 93 vvkvfrk 99
+v +f++
Potri.004G230100.1 102 HVLIFDN 108
****997 PP
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2 | B3 | 71 | 1.5e-22 | 273 | 367 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91
f+ +++ps+v++ l++p +fa+++ k++++ +tl ++gr+W vk++ +++++++++ GWk F+k+n+L +gDf+vF+l++ +e +
Potri.004G230100.1 273 FKVAMSPSYVHTGYKLSVPSSFARKYFTKNKGN--VTLCVTDGRTWPVKYC-NRTKSGVIFCHGWKAFAKDNKLAVGDFCVFELINVTEMS 360
667899********************6555554..7777777********5.55556688999*********************9988888 PP
.EEEEE- CS
B3 92 lvvkvfr 98
l+v +fr
Potri.004G230100.1 361 LKVVFFR 367
8888887 PP
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3 | B3 | 61.9 | 1.1e-19 | 463 | 555 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91
ffkv ++s++l+++ +++p +f+e++ + k ++++ + rsW vkli+r ++++ +l++GW +F+++n L++g ++ F+ ++ ++
Potri.004G230100.1 463 FFKVVLRSYYLNRCFVSVPMSFVERYFKHKS---QIVMLQVADRSWPVKLIIRWSQRQAILSAGWARFARENSLQVGHVCAFEIVK--NGM 548
99************************75543...5999999*********9999999999***********************765..666 PP
.EEEEE- CS
B3 92 lvvkvfr 98
l+v++ r
Potri.004G230100.1 549 LKVSISR 555
7888877 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 559 aa
Download sequence Send
to blast |
MGEGDGKPLM FVAKPPHFFK VILEDSLREG KLMLPQKFVT RYGMDLTNLA RLKVLGEAWE 60 IELKRCDGKV WLQKGWKEFA EYYSVACGHF LVFEYERNCD FHVLIFDNSA TEIDYPLKNN 120 RSEVPGRGLL KECTKDRGKE NNSVEILDHF SPSRRTRKKS PLPCPRPHKM VRTYSTYETG 180 TCSKLSTSVE VPPTGTWSRG MKLESSKTKA KLRCSVRGLD EEDSIRGGRG MLMARGQRLS 240 YAGALANMRS LTCYEKAKAL CRTSAFKSEN PFFKVAMSPS YVHTGYKLSV PSSFARKYFT 300 KNKGNVTLCV TDGRTWPVKY CNRTKSGVIF CHGWKAFAKD NKLAVGDFCV FELINVTEMS 360 LKVVFFRLKD VESLLSSEDM GGANQVEPNK SLVAKPQSDW NSRDGAGISN PDDEHKPGEF 420 EHSESRFEVE PDKFGKPELK NSSSVLVTRG SKTESKFIST HPFFKVVLRS YYLNRCFVSV 480 PMSFVERYFK HKSQIVMLQV ADRSWPVKLI IRWSQRQAIL SAGWARFARE NSLQVGHVCA 540 FEIVKNGMLK VSISRSDR*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
4i1k_A | 8e-20 | 241 | 557 | 17 | 144 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 8e-20 | 241 | 557 | 17 | 144 | B3 domain-containing transcription factor VRN1 |
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