PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

ZF-HD

Protein Properties

Length: 272aa MW: 30061.8 Da PI: 8.2655

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.004G229600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	102.4	3.1e-32	75	132	2	60
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 + vrY+eClkNhAas+Gg+a+DGCgEfmps geeg+++al+C+AC+CHRnFHR+e e e Potri.004G229600.1 75 KMVRYRECLKNHAASMGGNATDGCGEFMPS-GEEGSIEALTCSACNCHRNFHRKEIEGE 132 679************************9.999*******************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	1.3E-29	77	129	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	8.0E-26	77	132	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.1E-31	78	129	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.471	79	128	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	5.4E-30	191	260	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.59E-19	196	259	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	7.5E-27	198	254	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MELSSHEAGI PIPLNSTFGG AHGHGHGHLI HHDHPAVPHN HNNIISSTAP QIPSSNNGTS 60 ITTASIDDNH VPYKKMVRYR ECLKNHAASM GGNATDGCGE FMPSGEEGSI EALTCSACNC 120 HRNFHRKEIE GEHTSCTGDH CYHNSPVHFN RLGRKVILAS APHHQMIMSY NMGSLPSESD 180 EQEDGGGVLM ARPAQLMKKR FRTKFSQEQK EKMLNFAEKV GWKLQKQEET VVQQFCQEIG 240 VKRRVLKVWM HNNKHSLAKK NPSTTTTTSN S*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	1e-23	199	256	18	75	ZF-HD homeobox family protein
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Not detected in the meristem prior to exposure to long days (LDs), but after exposure to three LDs, stable accumulation on the flanks of the meristem adjacent to floral primordia, during floral induction. {ECO:0000269\|PubMed:22319055}.
Uniprot	TISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269\|PubMed:16428600}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269\|PubMed:22319055}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.004G229600.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by exposure to long days. {ECO:0000269\|PubMed:22319055}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC216410	1e-125	AC216410.1 Populus trichocarpa clone POP030-A06, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024455448.1	1e-179	zinc-finger homeodomain protein 4
Swissprot	Q9M9S0	2e-82	ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBL	A0A2K2AZ04	1e-177	A0A2K2AZ04_POPTR; Uncharacterized protein
STRING	POPTR_0004s23860.1	1e-178	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF206	34	253
Representative plant	OGRP91	16	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14440.2	1e-82	homeobox protein 31

Link Out ? help Back to Top
Phytozome	Potri.004G229600.1
Entrez Gene	18098374