PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G220000.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 110aa    MW: 12518.7 Da    PI: 10.1452
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G220000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.83.4e-12686386
                        EE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                  B3  3 kvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldg 86
                        k+l psdv ++  l lp +++++   g+   ++ l+++de+g +W++++++  ++ +r vl + W  Fv+++ Lk+gD++v+ +++
  Potri.004G220000.1  6 KKLNPSDVDRK--LHLPENCLKNLpRGQ---ETFLKIKDEDGIVWTFRCKIpPGGHSRPVLYGEWLLFVRQKCLKVGDIIVIVFNK 86
                        78888888887..9******96555444...456***************9976666679*********************998655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508638.6282108IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.3E-16487IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0043496IPR003340B3 DNA binding domain
SuperFamilySSF1019368.37E-14585IPR015300DNA-binding pseudobarrel domain
CDDcd100171.86E-15590No hitNo description
PfamPF023628.7E-10686IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MEEVTKKLNP SDVDRKLHLP ENCLKNLPRG QETFLKIKDE DGIVWTFRCK IPPGGHSRPV  60
LYGEWLLFVR QKCLKVGDII VIVFNKQKAR AAADTSGDLF EIKVKKTRN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G220000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011002452.12e-33PREDICTED: double-stranded RNA-binding protein 3-like
TrEMBLA0A2K2AYG31e-74A0A2K2AYG3_POPTR; Uncharacterized protein
STRINGPOPTR_0003s00430.13e-39(Populus trichocarpa)
STRINGPOPTR_0003s00440.13e-39(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13561527