PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G216900.2
Common NamePOPTR_0004s22650g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 284aa    MW: 31164.9 Da    PI: 8.5041
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G216900.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00045103125123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y+C+ C++sF++   L  H  +H
  Potri.004G216900.2 103 YECKTCNRSFPSFQALGGHRASH 125
                         99**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.36E-8102125No hitNo description
PfamPF139122.9E-13102127IPR007087Zinc finger, C2H2
SMARTSM003550.06103125IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.72103130IPR007087Zinc finger, C2H2
PROSITE patternPS000280105125IPR007087Zinc finger, C2H2
SuperFamilySSF576671.36E-8178205No hitNo description
PfamPF139121.1E-11182207IPR007087Zinc finger, C2H2
SMARTSM003550.058183205IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.66183210IPR007087Zinc finger, C2H2
PROSITE patternPS000280185205IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MEAQDDFVGS NDLTQIIKGK RTKRQRSSSP YMHGSISSPT TSSEVTERTE EEEDMANCLI  60
LLAQGDRPKQ IHENKSGKVE KFRARKSSDM STPTINKAGF LVYECKTCNR SFPSFQALGG  120
HRASHKRPKA TAEEKKGLVV ASMEDLGVCQ LIKRSNLDPS LSLQIGHNNN VNKGFQGNKA  180
KTHECSICGS EFMSGQALGG HMRRHRANTG NQAGMITTDS SSATAESNIH GDHHQIKPKN  240
ILALDLNLPA PEDDHHLRES NFQFTSTRQA LVFSATALVD CHY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.22950.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269|PubMed:9132053}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G216900.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1471530.0EF147153.1 Populus trichocarpa clone WS01228_G16 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006384965.10.0zinc finger protein ZAT5
SwissprotQ681X48e-60ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLA9PFN00.0A9PFN0_POPTR; Uncharacterized protein
STRINGPOPTR_0004s22650.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.18e-56C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]