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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Potri.004G215100.1 |
Common Name | POPTR_0004s22490g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family |
MYB |
Protein Properties |
Length: 341aa MW: 38183.6 Da PI: 7.1345 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.004G215100.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 52.7 | 9.5e-17 | 17 | 65 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
+g+W++eEd +l+++++++G+g +W + +++ g++R++k+c++rw++yl
Potri.004G215100.1 17 KGPWSPEEDSKLKEYIEKYGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 65
79*********************************************97 PP
|
2 | Myb_DNA-binding | 37.2 | 6.7e-12 | 72 | 114 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
g ++ eEd + +++ G++ W+ Ia+ ++ gRt++++k++w++
Potri.004G215100.1 72 GEFSDEEDRVICSLFASIGSR-WSIIAAQLP-GRTDNDIKNYWNT 114
789******************.*********.***********97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 341 aa
Download sequence Send
to blast |
MREMGRAPCC DKANVKKGPW SPEEDSKLKE YIEKYGTGGN WIALPQKAGL KRCGKSCRLR 60 WLNYLRPNLK HGEFSDEEDR VICSLFASIG SRWSIIAAQL PGRTDNDIKN YWNTKLKKKL 120 MAMAPQSQRK PPTFQSPHQT PPLSHSLPSM YKDSGGSFSY YSQNRSFTGF EPISQIPSSL 180 LSTNSVSLAT NSLLFQTTQE GLFSPMQYYH PVKDNYMVFG SEASCSSNSD GSCSLISYGR 240 EIKQEDMGFH SLMSSNGYGD QNQKVMLGSG NNGVEILNQW VEKPNGNIGE TPSDYDFIED 300 VKQQVSSSGN HNDVNGSNNN DNLLIDENKT PETVMYHYYY *
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC182714 | 0.0 | AC182714.2 Populus trichocarpa clone Pop1-86K15, complete sequence. |