PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G211700.1
Common NamePOPTR_0004s22130g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ARF
Protein Properties Length: 709aa    MW: 78055.3 Da    PI: 8.6649
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G211700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.11.6e-23112213199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f k+lt+sd+++ g +++p+ +ae++         ++ +  tl+ +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF  
  Potri.004G211700.1 112 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TLIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL- 199
                         89****************************996555545..8************************************************. PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                          + +++ l+v+++r+
  Potri.004G211700.1 200 -RAENGDLCVGIRRA 213
                         .4488999****997 PP
2Auxin_resp112.15.3e-37275357283
          Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                         a  a+++++F+vvY+Prast+eF+vk+++v++a+++ ++ GmRfkmafetedss++++ +Gtv++v+ +dp rWpnS+Wr+L+
  Potri.004G211700.1 275 AGLAANGNPFQVVYYPRASTPEFCVKASSVRAAMRTCWCSGMRFKMAFETEDSSRISWfMGTVASVQVADPDRWPNSPWRLLQ 357
                         66799****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.7E-38102215IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-29109215IPR015300DNA-binding pseudobarrel domain
CDDcd100173.18E-21111212No hitNo description
PfamPF023628.3E-22112213IPR003340B3 DNA binding domain
SMARTSM010193.8E-22112214IPR003340B3 DNA binding domain
PROSITE profilePS5086312.985112214IPR003340B3 DNA binding domain
PfamPF065072.4E-32274357IPR010525Auxin response factor
PROSITE profilePS5174515.151594672IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009743Biological Processresponse to carbohydrate
GO:0010154Biological Processfruit development
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0048366Biological Processleaf development
GO:0048441Biological Processpetal development
GO:0048442Biological Processsepal development
GO:0048589Biological Processdevelopmental growth
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    Send to blast
MKKTDKKSLD PQLWQACAGS MVQIPPLNTK VFYFPQGHAE HSQSPVDFPQ RIPSLVLCRV  60
ASVKFLADPG TDEVFAKISL VPLPDADLDI SQDVDICGDG NDSNNAEKPA SFAKTLTQSD  120
ANNGGGFSVP RYCAETIFPR LDYSADPPVQ TLIAKDVHGE VWKFRHIYRG TPRRHLLTTG  180
WSTFVNQKKL VAGDSIVFLR AENGDLCVGI RRAKRGVGIG SGPESSPSHI GWNSNNATSA  240
NPYGGFSLSV KEDEMRNGGV KGRGRVKSEE VLEAAGLAAN GNPFQVVYYP RASTPEFCVK  300
ASSVRAAMRT CWCSGMRFKM AFETEDSSRI SWFMGTVASV QVADPDRWPN SPWRLLQVTW  360
DEPDLLQTVK CVSPWLVELV SNMPVIHLSP FSPPRKKLRF PQQLDFPLDG QFQLPSFSGN  420
PLGPSSPLCC LSDNTPAGIQ GARHAQFGIS LSDFQFKKKL QSGLFLSSLQ RFNPRTKNSE  480
NYPTGHPDSN KNLSCLLTKG SSNPKLEKSD NAKKHQFLLF GQPILVEQQI SHSCSADAFP  540
QVVNERNSSD SNREKNSDVL RSAPGKQISQ EKSCTTGFSW HQSLQNTSEN GMDTGHCKAF  600
LESEDLGRTL DLSALHSYEE LRRKLAIMFG IERSDMLSHV LYRDVTGAVK QIGDEPFSVF  660
MKTAKRLTIL MNRASGNSVG RRTWITGMRN AENGLEAPNK TGPLSIFA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-77437846388Auxin response factor 5
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G211700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006384909.10.0auxin response factor 10
RefseqXP_024455732.10.0auxin response factor 10
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLB9MZ570.0B9MZ57_POPTR; Auxin response factor
STRINGPOPTR_0004s22130.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Representative plantOGRP5261578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0auxin response factor 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]